View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5827-17 (Length: 121)
Name: Solexa-NF5827-17
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5827-17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 48695326 - 48695213
Alignment:
| Q |
8 |
agttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaa |
107 |
Q |
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| T |
48695326 |
agttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaa |
48695227 |
T |
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| Q |
108 |
caccagaaagtgga |
121 |
Q |
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| T |
48695226 |
caccagaaagtgga |
48695213 |
T |
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Target: chr1 (Bit Score: 83; Significance: 9e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 9e-40
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 3455076 - 3455186
Alignment:
| Q |
7 |
aagttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaaca |
106 |
Q |
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||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||| |
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| T |
3455076 |
aagttgaagaaccaaatctcctgaagataacatgacatccaaaagctgtctttgctctttatcaagttttgttgtcgtaagaatttcagccatgctaaca |
3455175 |
T |
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| Q |
107 |
acaccagaaag |
117 |
Q |
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| T |
3455176 |
acaccagaaag |
3455186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 3479443 - 3479554
Alignment:
| Q |
9 |
gttgaagaaccaaatctccagatgacaacatgacatccaaaagctgtctttgctccttatcaagttttgtggtggaaagaatttcagccatgctaacaac |
108 |
Q |
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||||||||||||||||||| || || | |||| |||| || |||||||||||||| | ||||||||||| || | |||||||| |||||||||||||| |
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| T |
3479443 |
gttgaagaaccaaatctcctgacgatatcatggcatctaagagctgtctttgctctctgtcaagttttgttgtagtaagaattttggccatgctaacaac |
3479542 |
T |
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| Q |
109 |
accagaaagtgg |
120 |
Q |
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| T |
3479543 |
atcagaaagtgg |
3479554 |
T |
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