View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5827-21 (Length: 81)

Name: Solexa-NF5827-21
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5827-21
Solexa-NF5827-21
[»] chr2 (4 HSPs)
chr2 (1-77)||(12910820-12910896)
chr2 (1-77)||(23758952-23759028)
chr2 (1-62)||(24789930-24789991)
chr2 (5-77)||(22611223-22611295)
[»] chr4 (9 HSPs)
chr4 (1-79)||(16384218-16384296)
chr4 (1-77)||(10191214-10191290)
chr4 (1-77)||(18601414-18601489)
chr4 (1-77)||(23399951-23400026)
chr4 (1-77)||(28019632-28019707)
chr4 (7-77)||(33898763-33898832)
chr4 (16-77)||(25117199-25117260)
chr4 (34-62)||(10724621-10724649)
chr4 (34-62)||(10938390-10938418)
[»] chr7 (6 HSPs)
chr7 (1-77)||(11521167-11521243)
chr7 (5-77)||(11588795-11588867)
chr7 (6-77)||(645467-645538)
chr7 (1-77)||(11999210-11999286)
chr7 (1-61)||(16207653-16207712)
chr7 (22-61)||(12326159-12326198)
[»] chr6 (16 HSPs)
chr6 (1-77)||(19100227-19100303)
chr6 (3-77)||(25965024-25965098)
chr6 (3-77)||(25969671-25969745)
chr6 (3-77)||(25974111-25974185)
chr6 (5-77)||(17234926-17234998)
chr6 (3-77)||(17527641-17527715)
chr6 (5-77)||(9281463-9281535)
chr6 (12-77)||(23879225-23879290)
chr6 (1-77)||(13195652-13195728)
chr6 (5-77)||(17855530-17855601)
chr6 (5-77)||(33666124-33666196)
chr6 (5-74)||(13870156-13870225)
chr6 (8-77)||(19171750-19171819)
chr6 (1-62)||(8465443-8465505)
chr6 (8-62)||(12039480-12039535)
chr6 (38-71)||(34656920-34656953)
[»] scaffold0185 (1 HSPs)
scaffold0185 (2-77)||(2123-2198)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-77)||(12266-12342)
[»] chr3 (11 HSPs)
chr3 (5-77)||(17135899-17135971)
chr3 (1-77)||(13791006-13791082)
chr3 (1-77)||(15635627-15635703)
chr3 (1-77)||(44452811-44452887)
chr3 (5-62)||(24195855-24195912)
chr3 (1-77)||(18483128-18483204)
chr3 (5-77)||(18547980-18548052)
chr3 (1-77)||(1918999-1919073)
chr3 (5-61)||(17702738-17702794)
chr3 (1-64)||(7028830-7028892)
chr3 (5-77)||(23954314-23954385)
[»] chr1 (4 HSPs)
chr1 (5-77)||(4246368-4246440)
chr1 (1-77)||(26972156-26972232)
chr1 (1-77)||(13165722-13165797)
chr1 (1-77)||(14745539-14745615)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-77)||(36919-36995)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-64)||(159400-159463)
[»] scaffold0359 (1 HSPs)
scaffold0359 (1-77)||(2248-2323)
[»] chr8 (5 HSPs)
chr8 (1-77)||(22485461-22485536)
chr8 (1-64)||(22476558-22476620)
chr8 (32-61)||(13660144-13660173)
chr8 (32-61)||(13718787-13718816)
chr8 (5-61)||(45136444-45136498)
[»] chr5 (10 HSPs)
chr5 (5-77)||(9422270-9422342)
chr5 (5-77)||(22404517-22404589)
chr5 (3-77)||(22246113-22246186)
chr5 (3-77)||(25105199-25105272)
chr5 (3-77)||(25164292-25164365)
chr5 (13-77)||(24190201-24190265)
chr5 (5-77)||(23420312-23420387)
chr5 (1-61)||(23758029-23758088)
chr5 (1-61)||(23823485-23823544)
chr5 (1-77)||(22251795-22251873)
[»] scaffold0103 (1 HSPs)
scaffold0103 (5-77)||(25434-25506)
[»] scaffold0059 (1 HSPs)
scaffold0059 (3-53)||(48125-48174)
[»] scaffold0226 (3 HSPs)
scaffold0226 (32-62)||(7310-7340)
scaffold0226 (32-62)||(17897-17927)
scaffold0226 (32-62)||(27291-27321)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-77)||(110015-110091)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12910820 - 12910896
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  12910820 acagacgatacaagaaagaacacacactagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 12910896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23758952 - 23759028
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  23758952 acagacgatacaagaaagaatacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 23759028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24789991 - 24789930
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagag 62  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  24789991 acagacgatacaagacagaacacacactagattctaaacttgcatcacaaacgatacaagag 24789930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 22611223 - 22611295
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||||| || || |||||||||    
T  22611223 acgatacaagaaagaacacacaatagattctaaacttgcataacaaacggtacaagaacagaatacatgaaga 22611295  T

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Target: chr4 (Bit Score: 63; Significance: 5e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 16384218 - 16384296
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaagagt 79  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||||    
T  16384218 acagacgatacaagaaagaacacacaatagattctaaacttgcatcacaaacgatacaagagcagaatacatgaagagt 16384296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10191214 - 10191290
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  10191214 acagacgatacaagaaagaacacacaatagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 10191290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18601489 - 18601414
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  18601489 acagacgatacaagaa-gaacacacaatagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 18601414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23400026 - 23399951
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  23400026 acagatgatacaagaa-gaacacacactagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 23399951  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28019632 - 28019707
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||    
T  28019632 acagacgatacaagaa-gaacacacactagattctaaacttgcatcacaaacgagacaagagcagaatacatgaaga 28019707  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 33898832 - 33898763
Alignment:
Q  7 gatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||| ||||||||| ||| ||||||| ||| |||||||||||||||||||||||| |||||||||    
T  33898832 gatacaagaa-gaacacacagtagattctaaatttgtatcacaaacgatacaagagcataatacatgaaga 33898763  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 25117199 - 25117260
Alignment:
Q  16 aagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||| ||| |||||||||| | |||||||||||||||||||| || |||||||||    
T  25117199 aagaacacacagtagattctaaacttacctcacaaacgatacaagagcagaatacatgaaga 25117260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 10724621 - 10724649
Alignment:
Q  34 ctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||||||||||||    
T  10724621 ctaaacttgcatcacaaacgatacaagag 10724649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 10938390 - 10938418
Alignment:
Q  34 ctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||||||||||||    
T  10938390 ctaaacttgcatcacaaacgatacaagag 10938418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11521243 - 11521167
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  11521243 acagacgatacaagaaagaacacacaatagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 11521167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 11588795 - 11588867
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  11588795 acgatacaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 11588867  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 7e-24
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 645467 - 645538
Alignment:
Q  6 cgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  645467 cgatacaagaaagaacacatactagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 645538  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11999210 - 11999286
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  11999210 acagacgatacaagagagaacacatagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 11999286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16207712 - 16207653
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||||||||||||||||  | ||||  || |||||||||| |||||||||||||||||||    
T  16207712 acagacgatacaagaaagg-ctcacaaaaggttctaaacttacatcacaaacgatacaaga 16207653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 12326159 - 12326198
Alignment:
Q  22 acacactagtttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||| ||| ||||| ||||||||||||||||||||||||    
T  12326159 acacaataggttctagacttgcatcacaaacgatacaaga 12326198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-27; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19100227 - 19100303
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  19100227 acagacgatacaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 19100303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 25965024 - 25965098
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25965024 agacgataaaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaacacatgaaga 25965098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 25969671 - 25969745
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25969671 agacgataaaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaacacatgaaga 25969745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 25974111 - 25974185
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  25974111 agacgataaaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaacacatgaaga 25974185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 17234926 - 17234998
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  17234926 acgatacaagaaagaacacacattagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 17234998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-23
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 17527715 - 17527641
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  17527715 agacgataaaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 17527641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 9281535 - 9281463
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| || |||||||||    
T  9281535 acgatacaagaaagaacacacaatagattctaaacttgcatcacaaatgatacaagagcagaatacatgaaga 9281463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 23879225 - 23879290
Alignment:
Q  12 aagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  23879225 aagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 23879290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13195652 - 13195728
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||    
T  13195652 acagacgatccaagaaagaaaacacagtagattctaaacttgcatcacaaacgataaaatagcataatacatgaaga 13195728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 17855530 - 17855601
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||    
T  17855530 acgatacaagaa-gaacacacaatagattctaaacttgcatcacaaacgatacaagagcataatacataaaga 17855601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 33666124 - 33666196
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||| |||||||||||||||| |||||||||    
T  33666124 acgatacaagaaagaacacacgatatattctaaacttgcatcacaagcgatacaagagcataatacatgaaga 33666196  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 13870225 - 13870156
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatga 74  Q
    |||||||||||||||||||||  | | |||||||||||| |||||||||||||||||||| || ||||||    
T  13870225 acgatacaagaaagaacacactgttgattctaaacttgcgtcacaaacgatacaagagcagaatacatga 13870156  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 19171750 - 19171819
Alignment:
Q  8 atacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||||| |  || |||||||||| |||||||||||||||||||||| || |||| ||||    
T  19171750 atacaagaaagaacacaaagaagattctaaacttacatcacaaacgatacaagagcagaatacataaaga 19171819  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8465505 - 8465443
Alignment:
Q  1 acagacgatacaagaaagaa-cacacactagtttctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||| ||||   ||| |||||||||||||||| ||||||||||||||    
T  8465505 acagacgatacaagaaagaatcacaatataggttctaaacttgcatcataaacgatacaagag 8465443  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 12039535 - 12039480
Alignment:
Q  8 atacaagaaagaa-cacacactagtttctaaacttgcatcacaaacgatacaagag 62  Q
    ||||||||||| | |||| | ||| |||||||||||||||||||||||||||||||    
T  12039535 atacaagaaaggatcacaaaataggttctaaacttgcatcacaaacgatacaagag 12039480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 34656953 - 34656920
Alignment:
Q  38 acttgcatcacaaacgatacaagagcataacaca 71  Q
    ||||||||||||||||||||||||| ||||||||    
T  34656953 acttgcatcacaaacgatacaagagaataacaca 34656920  T

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Target: scaffold0185 (Bit Score: 60; Significance: 3e-26; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 60; E-Value: 3e-26
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 2198 - 2123
Alignment:
Q  2 cagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  2198 cagacgatacaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 2123  T

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Target: scaffold0020 (Bit Score: 57; Significance: 2e-24; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12342 - 12266
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  12342 acaggcgatacaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 12266  T

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Target: chr3 (Bit Score: 57; Significance: 2e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 17135971 - 17135899
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  17135971 acgatacaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 17135899  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13791006 - 13791082
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||| || |||||||||    
T  13791006 acagacgatacaagaaagaacacagagtagattctaaacatgcatcacaaacgatacaagagcagaatacatgaaga 13791082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15635703 - 15635627
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  15635703 acaggcgatacaagcaagaacacacagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 15635627  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44452811 - 44452887
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||| || |||||||||    
T  44452811 acagacgatacaagagagaacacacagtagattctaaacttgcttcacaaacgatacaagagcagaatacatgaaga 44452887  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 24195855 - 24195912
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  24195855 acgatacaagaaagaacacacagtagattctaaacttgcatcacaaacgatacaagag 24195912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18483204 - 18483128
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||| ||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||| |||| ||||    
T  18483204 acagacaatacaagaaagaacacacaataaattctaaacttgcatcacaaatgatacaagagcataatacataaaga 18483128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 18547980 - 18548052
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  18547980 acgatacaagaaagaatacatagtagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 18548052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1919073 - 1918999
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||||| || |||||||||    
T  1919073 acagacgatacaagaa-gaacacacactagattataa-cttgcatcacaaacgatacaagagcagaatacatgaaga 1918999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 17702738 - 17702794
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  17702738 acgatacaaaaaagaacacacagtagattctaaacttgcatcacaaacgatacaaga 17702794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 7028892 - 7028830
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagca 64  Q
    |||||||||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||    
T  7028892 acagacgatacaagaa-gaacacacagtaaattctaaacttgcatcacaaacgatacaagagca 7028830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 23954385 - 23954314
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||| ||||||||| ||| || ||||||||||||||||||||||||| |||| || |||||||||    
T  23954385 acgatacaagaa-gaacacacaatagattttaaacttgcatcacaaacgatacaaaagcagaatacatgaaga 23954314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 4246368 - 4246440
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  4246368 acgatacaagaaagaacacacaatagattctaaacttgcatcacaaacgatacaagagcaaaatacatgaaga 4246440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26972232 - 26972156
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| || |||||||||    
T  26972232 acagacgatacaagaaagaacacacaatagattctaaacttgaatcacaaacgatacaagagcagaatacatgaaga 26972156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13165722 - 13165797
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||| || |||||||||    
T  13165722 acagacgatacaagaa-gaacacacagtagattctaaacttgcatcacaaccgatacaagagcagaatacatgaaga 13165797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14745615 - 14745539
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||| | || |||||||||    
T  14745615 acagacgatacaagaaataacacacaatagattctaaacttgcatcacaaatgatacaagagaagaatacatgaaga 14745539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 53; Significance: 4e-22; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 53; E-Value: 4e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36919 - 36995
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||| || |||||||||    
T  36919 acagacgatacaagaaataacacataatagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 36995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 52; Significance: 2e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 52; E-Value: 2e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 159400 - 159463
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagca 64  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  159400 acagacgatacaagaaagaaaacacaatagattctaaacttgcatcacaaacgatacaagagca 159463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2248 - 2323
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||| || |||||||||    
T  2248 acagacgatacaagaa-gaacacacaatagattctaaacttgcgtcacaaacgatacaagagcagaatacatgaaga 2323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22485461 - 22485536
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||| || |||||||||    
T  22485461 acagacgatacaagaa-gaacatacactagattctaaacttgcatcacaaatgatacaagagcagaatacatgaaga 22485536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22476558 - 22476620
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagca 64  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  22476558 acagacgatacaagaa-gaatacacactagattctaaacttgcatcacaaatgatacaagagca 22476620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 13660173 - 13660144
Alignment:
Q  32 ttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||||||||||||||||||||||||||||    
T  13660173 ttctaaacttgcatcacaaacgatacaaga 13660144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 13718816 - 13718787
Alignment:
Q  32 ttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||||||||||||||||||||||||||||    
T  13718816 ttctaaacttgcatcacaaacgatacaaga 13718787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 45136444 - 45136498
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaaga 61  Q
    |||||||||||| |||||||   ||| ||||| ||||||||||||||||||||||||    
T  45136444 acgatacaagaaggaacacaa--taggttctagacttgcatcacaaacgatacaaga 45136498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 9422342 - 9422270
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  9422342 acgatacaagagagaacacatagtagattctaaacttgcatcacagacgatacaagagcataatacatgaaga 9422270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 22404589 - 22404517
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||| | |||||||    
T  22404589 acgatacaagaaagaacacatagtagattctaaacttgcatcacaaatgatacaagagcataataaatgaaga 22404517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 22246186 - 22246113
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  22246186 agacgatacaagaa-gaacacacagtagattctaaacttgcatcacaaacgatacaagagcaaaatccatgaaga 22246113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 25105272 - 25105199
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| | || |||||||||    
T  25105272 agacgatacaagaa-gaacacacagtagattctaaacttgcatcacaaacgatacaagagtagaatacatgaaga 25105199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 25164365 - 25164292
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| | || |||||||||    
T  25164365 agacgatacaagaa-gaacacacagtagattctaaacttgcatcacaaacgatacaagagtagaatacatgaaga 25164292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 24190201 - 24190265
Alignment:
Q  13 agaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| |||| || |||||||||    
T  24190201 agaaagaacacacaatagattctaaacttgcatcacaaacgatacaaaagcagaatacatgaaga 24190265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 23420387 - 23420312
Alignment:
Q  5 acgatacaagaaagaacacacacta---gtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||||| |||||||||||| ||   | ||||||||||||||||||||||||||||||||| || |||||||||    
T  23420387 acgatacaataaagaacacacagtaagagattctaaacttgcatcacaaacgatacaagagcagaatacatgaaga 23420312  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23758088 - 23758029
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||||||||||||||||| | ||||  || ||||| ||||||||||||||||||||||||    
T  23758088 acagacgatacaagaaaga-ctcacaaaaggttctagacttgcatcacaaacgatacaaga 23758029  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23823544 - 23823485
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaaga 61  Q
    ||||||||||||||||||| | ||||  || ||||| ||||||||||||||||||||||||    
T  23823544 acagacgatacaagaaaga-ctcacaaaaggttctagacttgcatcacaaacgatacaaga 23823485  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 22251873 - 22251795
Alignment:
Q  1 acagacgatacaagaaagaacacacactagtttctaaactt---gcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||| ||||||||| ||  ||||||| ||   |||||||||| |||||||||||| || |||||||||    
T  22251873 acagacgatacaagaa-gaacacacaatacattctaaattttttgcatcacaaaagatacaagagcagaatacatgaaga 22251795  T

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Target: scaffold0103 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 25506 - 25434
Alignment:
Q  5 acgatacaagaaagaacacacactagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    |||||||||||||||||| | | ||| |||||||| |||||||||||||||||| ||| | || |||||||||    
T  25506 acgatacaagaaagaacatatagtagattctaaacgtgcatcacaaacgatacacgagtagaatacatgaaga 25434  T

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Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 48174 - 48125
Alignment:
Q  3 agacgatacaagaaagaacacacactagtttctaaacttgcatcacaaacg 53  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  48174 agacgatacaagaa-gaacacacattagattctaaacttgcatcacaaacg 48125  T

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Target: scaffold0226 (Bit Score: 31; Significance: 0.000000006; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 7340 - 7310
Alignment:
Q  32 ttctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||||||||||||||    
T  7340 ttctaaacttgcatcacaaacgatacaagag 7310  T

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Target: scaffold0226; HSP #2
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 17927 - 17897
Alignment:
Q  32 ttctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||||||||||||||    
T  17927 ttctaaacttgcatcacaaacgatacaagag 17897  T

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Target: scaffold0226; HSP #3
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 27321 - 27291
Alignment:
Q  32 ttctaaacttgcatcacaaacgatacaagag 62  Q
    |||||||||||||||||||||||||||||||    
T  27321 ttctaaacttgcatcacaaacgatacaagag 27291  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 110091 - 110015
Alignment:
Q  1 acagacgatacaagaaagaacacacac-tagtttctaaacttgcatcacaaacgatacaagagcataacacatgaaga 77  Q
    ||||||| |||||||| |||||||||  ||| |||||||||| ||||||||||||||||| | || || |||||||||    
T  110091 acagacgttacaagaa-gaacacacaaatagattctaaactttcatcacaaacgatacaaaaacagaatacatgaaga 110015  T

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