View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5827-22 (Length: 75)
Name: Solexa-NF5827-22
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5827-22 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-33
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 49738332 - 49738406
Alignment:
| Q |
1 |
ggacaagaagaggaagagaagatagaaggacaaggcttaggagccaacccttgatgaatgcaacaactaaacctc |
75 |
Q |
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| T |
49738332 |
ggacaagaagaggaagagaagatagaaggacaaggcttagaagccaacccttgatgaatgcaacaactaaacctc |
49738406 |
T |
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Target: chr4 (Bit Score: 43; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 51211840 - 51211766
Alignment:
| Q |
1 |
ggacaagaagaggaagagaagatagaaggacaaggcttaggagccaacccttgatgaatgcaacaactaaacctc |
75 |
Q |
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||||||||||||||| ||| ||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||| |
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| T |
51211840 |
ggacaagaagaggaatagacgatagaaggacaagggttaaaagccaacccaagatgaatgccacaactaaacctc |
51211766 |
T |
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