View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5827-3 (Length: 182)

Name: Solexa-NF5827-3
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5827-3
Solexa-NF5827-3
[»] chr7 (2 HSPs)
chr7 (1-182)||(28500121-28500302)
chr7 (65-149)||(5230029-5230113)
[»] chr8 (4 HSPs)
chr8 (1-156)||(12772241-12772396)
chr8 (1-166)||(12791101-12791266)
chr8 (53-124)||(12811945-12812016)
chr8 (62-149)||(34830882-34830969)
[»] chr1 (1 HSPs)
chr1 (26-123)||(46039609-46039706)
[»] chr2 (1 HSPs)
chr2 (53-124)||(5546386-5546457)
[»] chr6 (2 HSPs)
chr6 (29-117)||(22611522-22611610)
chr6 (81-123)||(5652964-5653006)
[»] chr4 (2 HSPs)
chr4 (86-123)||(45671480-45671517)
chr4 (55-124)||(45690331-45690400)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-117)||(334542-334645)
[»] chr3 (1 HSPs)
chr3 (53-112)||(19142284-19142343)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 28500302 - 28500121
Alignment:
Q  1 gaagcgtatagagaatgctacaagcagacaagtgacaatctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgct 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28500302 gaagcgtatagagaatgctacaagcagacaagtgacattctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgct 28500203  T
Q  101 gaagttgctcttatcatcttctctccaagaggaaaactttatgaattttcaagctcctggtaagtaaattaattgtacccta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28500202 gaagttgctcttatcatcttctctccaagaggaaaactttatgaattttcaagctcctggtaagtaaattaattgtacccta 28500121  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 5230029 - 5230113
Alignment:
Q  65 aagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctctccaagaggaaaactttatgaatttt 149  Q
    |||||||| | ||| || |||||||| ||||||||||| ||||||||||||||||||||  |  | ||||| |||||||||||||    
T  5230029 aagaaagcttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaatttt 5230113  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 12772241 - 12772396
Alignment:
Q  1 gaagcgtatagagaatgctacaagcagacaagtgacaatctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgct 100  Q
    ||||||||||||||| || ||||| |||||||| ||| ||||||||||  | ||||||||||||||||| || ||||| || || ||  | |||||||||    
T  12772241 gaagcgtatagagaacgcaacaagtagacaagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgct 12772340  T
Q  101 gaagttgctcttatcatcttctctccaagaggaaaactttatgaattttcaagctc 156  Q
    || |||||||||||  | ||||| |||||||| |  |||||||||||| |||||||    
T  12772341 gaggttgctcttattgttttctcaccaagagggaggctttatgaatttacaagctc 12772396  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 12791101 - 12791266
Alignment:
Q  1 gaagcgtatagagaatgctacaagcagacaagtgacaatctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgct 100  Q
    ||||||||||||||| || ||||| |||||||| ||| ||||||||||  | ||||||||||||||||| || ||||| || || ||  | |||||||||    
T  12791101 gaagcgtatagagaacgcaacaagtagacaagtaacattctcaaagagaagaaatggtttgttgaagaaggcctttgaactgtcagtgttatgtgatgct 12791200  T
Q  101 gaagttgctcttatcatcttctctccaagaggaaaactttatgaattttcaagctcctggtaagta 166  Q
    || |||||||||||  | ||||| |||||||| |  |||||||||||| | |||||  ||||||||    
T  12791201 gaggttgctcttattgttttctcaccaagagggaggctttatgaatttgctagctctaggtaagta 12791266  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 12812016 - 12811945
Alignment:
Q  53 aatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctct 124  Q
    ||||||||| | |||||||| | ||| || |||||||||||||||||||||||||| |||||||| ||||||    
T  12812016 aatggtttgctcaagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctct 12811945  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 34830969 - 34830882
Alignment:
Q  62 ttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctctccaagaggaaaactttatgaatttt 149  Q
    ||||| ||||| | ||| || |||||||| ||||||||||||||||||||||||||||||||    ||||||||||| ||||| ||||    
T  34830969 ttgaaaaaagcttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctccaacagaggaaaactctatgagtttt 34830882  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 46039706 - 46039609
Alignment:
Q  26 agacaagtgacaatctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctc 123  Q
    |||||||| ||| | ||||||||  | | |||||||||||||||||| ||||| || |||||  | ||||||||||||||||||||||||||||||||    
T  46039706 agacaagtaacattttcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctc 46039609  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 5546386 - 5546457
Alignment:
Q  53 aatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctct 124  Q
    |||||||||||||||||||||| |||  |||||||||| |||||||| ||||||||||||||  ||||||||    
T  5546386 aatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttatagtcttctct 5546457  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 22611522 - 22611610
Alignment:
Q  29 caagtgacaatctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcat 117  Q
    ||||| ||| ||||||||||  | | ||| |||||||||||||| |||||||| | |||||| ||||||||||||||||| ||||||||    
T  22611522 caagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctttgtgttctatgtgatgctgaagttgcacttatcat 22611610  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 5652964 - 5653006
Alignment:
Q  81 tatctgttctctgtgatgctgaagttgctcttatcatcttctc 123  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    
T  5652964 tatctgttctttgtgatgctgaagttgctcttattatcttctc 5653006  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 45671480 - 45671517
Alignment:
Q  86 gttctctgtgatgctgaagttgctcttatcatcttctc 123  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  45671480 gttctttgtgatgctgaagttgctcttatcatcttctc 45671517  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 45690331 - 45690400
Alignment:
Q  55 tggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctcttatcatcttctct 124  Q
    |||||||||||||||||||   ||| | |||||||| |||||||||||||||||||| || || ||||||    
T  45690331 tggtttgttgaagaaagcacaagagatctctgttctttgtgatgctgaagttgctctcattattttctct 45690400  T

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Target: scaffold0003 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 334645 - 334542
Alignment:
Q  14 aatgctacaagcagacaagtgacaatctcaaagaggcgtaatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctctta 113  Q
    |||||||  ||||||||||| ||| | ||||||||  | | ||| ||||||||||||||    |||||| || |||| ||||||||||| |||||| |||    
T  334645 aatgctaatagcagacaagttacattttcaaagagaagaagtgggttgttgaagaaagctcaggagctagctattctttgtgatgctgaggttgctgtta 334546  T
Q  114 tcat 117  Q
    ||||    
T  334545 tcat 334542  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 19142343 - 19142284
Alignment:
Q  53 aatggtttgttgaagaaagcatttgagctatctgttctctgtgatgctgaagttgctctt 112  Q
    ||||| |||||||||||||| | |||  |||| ||||| |||||||| ||||||||||||    
T  19142343 aatggattgttgaagaaagcttatgaattatccgttctttgtgatgccgaagttgctctt 19142284  T

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