View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5828-1 (Length: 149)
Name: Solexa-NF5828-1
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5828-1 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 4e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 4e-67
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 4792561 - 4792429
Alignment:
| Q |
7 |
agctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagttt |
106 |
Q |
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| T |
4792561 |
agctcaaaggggtgaaagccaaagaactcatgctttggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagttt |
4792462 |
T |
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| Q |
107 |
agctggtatcaccaaaactttcccagttgaggc |
139 |
Q |
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| T |
4792461 |
agctggtatcaccaaaactttcccagttgaggc |
4792429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 39345556 - 39345447
Alignment:
| Q |
27 |
aaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaactt |
126 |
Q |
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| T |
39345556 |
aaagaactcatgttacggcctcctatcaatgagattattgttgatgaagaaccaactggaaaaattcatttcaagagttatggtggtatcaccaagactt |
39345457 |
T |
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| Q |
127 |
tcccagttga |
136 |
Q |
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|||| ||||| |
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| T |
39345456 |
tccctgttga |
39345447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 39347758 - 39347634
Alignment:
| Q |
12 |
aaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctg |
111 |
Q |
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||||| |||||||| || ||||||||| | |||| ||||| ||||| |||| | | |||||| || | ||| |||||||| ||||||||| | |||| |
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| T |
39347758 |
aaaggcgtgaaagctaaggaactcatgttatggccacctgttaatgagattactgttgatgaacaaccaactgggaagattcatttcaagagtcttgctg |
39347659 |
T |
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| Q |
112 |
gtatcaccaaaactttcccagttga |
136 |
Q |
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| T |
39347658 |
gtatcactaagactttccctgttga |
39347634 |
T |
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