View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5828-10 (Length: 127)
Name: Solexa-NF5828-10
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5828-10 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 5e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 3498699 - 3498818
Alignment:
| Q |
8 |
tttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttag |
107 |
Q |
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| T |
3498699 |
tttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgtcaa |
3498798 |
T |
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| Q |
108 |
acacacaagcatcttacaat |
127 |
Q |
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| T |
3498799 |
acacacaagcatcttacaat |
3498818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 3510858 - 3510972
Alignment:
| Q |
9 |
ttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttaga |
108 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| || |
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| T |
3510858 |
ttgggaccaatgaagttgaaccgatcctgattgtaatacagaacagacac--agaaaattgggccatctagctgaaatcaaaacaactataattgtcag- |
3510954 |
T |
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| Q |
109 |
cacacaagcatcttacaat |
127 |
Q |
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| T |
3510955 |
-acacaagcatcttacaat |
3510972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 6e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 31951164 - 31951279
Alignment:
| Q |
8 |
tttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttag |
107 |
Q |
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| T |
31951164 |
tttgggaccaatgaagttgaaccaatcctgattataatacagaacagacacaaagaaaattgggtcatctagctgaaatcaaaacaactataagtgtcag |
31951263 |
T |
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| Q |
108 |
acacacaagcatctta |
123 |
Q |
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| T |
31951264 |
acacataagcatctta |
31951279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 31951428 - 31951329
Alignment:
| Q |
16 |
caatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaa |
115 |
Q |
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| T |
31951428 |
caatgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaaaacaactataagtgtcagacacacaa |
31951329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 2354522 - 2354403
Alignment:
| Q |
8 |
tttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttag |
107 |
Q |
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||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
2354522 |
tttggaaccaatgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaaaacaattataagtcacgc |
2354423 |
T |
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| Q |
108 |
acacacaagcatcttacaat |
127 |
Q |
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||| |||||||||||||||| |
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| T |
2354422 |
acatacaagcatcttacaat |
2354403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 2354749 - 2354860
Alignment:
| Q |
13 |
gaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacaca |
112 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||| | || |||||||||||| || ||||||||| ||||||| |
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| T |
2354749 |
gaccaatgaagttgaaccgatcctgattgtaatacagaacagacacaaagaaaattgggccttttatctgaaatcaaaataattataagtgtcagacaca |
2354848 |
T |
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| Q |
113 |
caagcatcttac |
124 |
Q |
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|||||||||||| |
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| T |
2354849 |
caagcatcttac |
2354860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 22925904 - 22925838
Alignment:
| Q |
44 |
atacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagaca |
110 |
Q |
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|||||||| ||||||| ||||| | |||||||||| ||||||||||| ||| | |||||||||||| |
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| T |
22925904 |
atacagaagagacacaaagaaaatcgggccatctaactgaaatcaaagcaattgcaagtgttagaca |
22925838 |
T |
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