View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5828-12 (Length: 126)
Name: Solexa-NF5828-12
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5828-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 2e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 998328 - 998453
Alignment:
| Q |
1 |
cagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgagatgaaggtgcaa |
100 |
Q |
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| T |
998328 |
cagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctcttccaaatactcgagatgaaggtgcaa |
998427 |
T |
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| Q |
101 |
tgaaggcggtgcggaattggaaactt |
126 |
Q |
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| T |
998428 |
tgaaggcggtgcggaattggaaactt |
998453 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 9549838 - 9549874
Alignment:
| Q |
68 |
cacctcttccaaatactcgagatgaaggtgcaatgaa |
104 |
Q |
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| T |
9549838 |
cacctcttccaaatactcgagaagaaggagcaatgaa |
9549874 |
T |
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