View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5828-16 (Length: 77)

Name: Solexa-NF5828-16
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5828-16
Solexa-NF5828-16
[»] chr5 (1 HSPs)
chr5 (8-77)||(22664172-22664241)
[»] chr1 (3 HSPs)
chr1 (8-77)||(25590196-25590265)
chr1 (8-75)||(44540734-44540801)
chr1 (8-75)||(50780631-50780698)
[»] chr7 (4 HSPs)
chr7 (8-77)||(43087811-43087880)
chr7 (8-77)||(293867-293936)
chr7 (8-77)||(8266541-8266610)
chr7 (8-77)||(35894954-35895023)
[»] chr2 (2 HSPs)
chr2 (8-77)||(296434-296503)
chr2 (8-77)||(29961030-29961099)
[»] chr8 (2 HSPs)
chr8 (8-77)||(37186162-37186231)
chr8 (8-77)||(37790484-37790553)
[»] chr4 (2 HSPs)
chr4 (8-77)||(5725215-5725284)
chr4 (8-77)||(25170893-25170964)
[»] chr3 (2 HSPs)
chr3 (8-77)||(11748190-11748259)
chr3 (8-77)||(18648985-18649054)


Alignment Details
Target: chr5 (Bit Score: 58; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-25
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 22664241 - 22664172
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22664241 gagaaaaagtgaaacaagtaaagttgcagtcatatagaagaagatatgagattatgcaaatggaagaaga 22664172  T

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Target: chr1 (Bit Score: 50; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 25590265 - 25590196
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  25590265 gagaaaaagtgaatcaagtcaagttgcagccatatagaagaaagtatgagattatgcaaatggaggaaga 25590196  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 44540801 - 44540734
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaa 75  Q
    ||||||||||||||||||||||||||||  |||||||||| |  ||||| || |||||||||||||||    
T  44540801 gagaaaaggtgaaacaagtcaagttgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaa 44540734  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 50780698 - 50780631
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaa 75  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||||| || |||||||||||||||    
T  50780698 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaa 50780631  T

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Target: chr7 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 43087811 - 43087880
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||||| || |||||||||||||||||    
T  43087811 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaaga 43087880  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 293867 - 293936
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||| ||||||||||||||| ||||| |||||||||| |  ||||| || ||||| |||||||||||    
T  293867 gagaaaaagtgaaacaagtcaagctgcagtcatatagaaggaagtatgaaatgatgcagatggaagaaga 293936  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 8266541 - 8266610
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    |||||||||||||||| ||||||||| || | ||||||||||  ||| |||| ||||||||||| |||||    
T  8266541 gagaaaaggtgaaacatgtcaagttgtagtcttatagaagaaagtatcagatgatgcaaatggaggaaga 8266610  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 35894954 - 35895023
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||| ||| ||||  |||||||||| |  ||||| || |||||||||||||||||    
T  35894954 gagaaaaggtgaaacaagttaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaaga 35895023  T

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Target: chr2 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 296434 - 296503
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||||| || |||||||||||||||||    
T  296434 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaaga 296503  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 29961030 - 29961099
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||||| || |||||||||||||||||    
T  29961030 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaaga 29961099  T

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Target: chr8 (Bit Score: 34; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 37186231 - 37186162
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    |||||||||| |||||||||||| ||||  |||||||||| |  ||||| || |||||||||||||||||    
T  37186231 gagaaaaggttaaacaagtcaagctgcaatcatatagaaggaagtatgaaatgatgcaaatggaagaaga 37186162  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 37790553 - 37790484
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||   ||||||||| |  ||||| || ||||| |||||||||||    
T  37790553 gagaaaaggtgaaacaagtcaagctgcaattatatagaaggaagtatgaaatgatgcatatggaagaaga 37790484  T

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Target: chr4 (Bit Score: 34; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 5725284 - 5725215
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||| | || |||||||||||||||||    
T  5725284 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtataaaatgatgcaaatggaagaaga 5725215  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 25170893 - 25170964
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaa--gatatgagattatgcaaatggaagaaga 77  Q
    |||||||  |||||||||||| ||||| | ||||||||||||   ||||||||| ||||||||||| |||||    
T  25170893 gagaaaaaatgaaacaagtcatgttgctgtcatatagaagaaagtatatgagatgatgcaaatggaggaaga 25170964  T

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Target: chr3 (Bit Score: 34; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 11748259 - 11748190
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||||| |  |||||||||||||||||    
T  11748259 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtatgaaaggatgcaaatggaagaaga 11748190  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 18649054 - 18648985
Alignment:
Q  8 gagaaaaggtgaaacaagtcaagttgcagccatatagaagaagatatgagattatgcaaatggaagaaga 77  Q
    ||||||||||||||||||||||| ||||  |||||||||| |  ||| | || |||||||||||||||||    
T  18649054 gagaaaaggtgaaacaagtcaagctgcaatcatatagaaggaagtattaaatgatgcaaatggaagaaga 18648985  T

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