View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5828-2 (Length: 144)

Name: Solexa-NF5828-2
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5828-2
Solexa-NF5828-2
[»] chr5 (13 HSPs)
chr5 (2-138)||(37533964-37534100)
chr5 (2-138)||(37399972-37400108)
chr5 (2-122)||(37712488-37712608)
chr5 (2-122)||(37824759-37824879)
chr5 (21-138)||(37595207-37595324)
chr5 (21-138)||(37436590-37436707)
chr5 (21-138)||(37640755-37640872)
chr5 (2-122)||(37697651-37697771)
chr5 (2-138)||(37703532-37703668)
chr5 (20-138)||(37392121-37392236)
chr5 (12-138)||(37381495-37381621)
chr5 (13-122)||(37429616-37429725)
chr5 (10-61)||(37412513-37412564)
[»] chr4 (2 HSPs)
chr4 (5-122)||(24216916-24217033)
chr4 (12-107)||(16842067-16842162)
[»] chr3 (1 HSPs)
chr3 (21-71)||(14553921-14553971)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 2e-62; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 2e-62
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 37533964 - 37534100
Alignment:
Q  2 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37533964 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgacaaatccaatctttg 37534063  T
Q  102 aagattaggtaaagagaggattacatttgacaaattt 138  Q
    |||||||||||||||||||||  || |||||||||||    
T  37534064 aagattaggtaaagagaggatgtcacttgacaaattt 37534100  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 37400108 - 37399972
Alignment:
Q  2 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttg 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||    
T  37400108 aagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttg 37400009  T
Q  102 aagattaggtaaagagaggattacatttgacaaattt 138  Q
    |||||||||||||||||||||  || |||||||||||    
T  37400008 aagattaggtaaagagaggatgtcacttgacaaattt 37399972  T

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Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 37712488 - 37712608
Alignment:
Q  2 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttg 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||    
T  37712488 aagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttg 37712587  T
Q  102 aagattaggtaaagagaggat 122  Q
    |||||||||||||||||||||    
T  37712588 aagattaggtaaagagaggat 37712608  T

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Target: chr5; HSP #4
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 37824759 - 37824879
Alignment:
Q  2 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttg 101  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||    
T  37824759 aagcagaggaagagaggtccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatgattaaatgacaaatccaatctttg 37824858  T
Q  102 aagattaggtaaagagaggat 122  Q
    |||||||||||||||||||||    
T  37824859 aagattaggtaaagagaggat 37824879  T

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Target: chr5; HSP #5
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 37595207 - 37595324
Alignment:
Q  21 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagattaggtaaagagagg 120  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  37595207 caagtaccttagaggagtgctcaagttggactttggaagttgaccactaaggttatcattaaatgacaaatccaatctttgaagattaggtaaagagagg 37595306  T
Q  121 attacatttgacaaattt 138  Q
    ||  || |||||||||||    
T  37595307 atgtcacttgacaaattt 37595324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 37436590 - 37436707
Alignment:
Q  21 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagattaggtaaagagagg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||    
T  37436590 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagagg 37436689  T
Q  121 attacatttgacaaattt 138  Q
    ||  || |||||||||||    
T  37436690 atgtcacttgacaaattt 37436707  T

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Target: chr5; HSP #7
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 37640755 - 37640872
Alignment:
Q  21 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagattaggtaaagagagg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||    
T  37640755 caagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttgaagattaggtaaagagagg 37640854  T
Q  121 attacatttgacaaattt 138  Q
    ||  || |||||||||||    
T  37640855 atgtcacttgacaaattt 37640872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 37697651 - 37697771
Alignment:
Q  2 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttg 101  Q
    |||||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||    
T  37697651 aagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatccaatctttg 37697750  T
Q  102 aagattaggtaaagagaggat 122  Q
    |||||||||||||||||||||    
T  37697751 aagattaggtaaagagaggat 37697771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 7e-41
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 37703532 - 37703668
Alignment:
Q  2 aagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttg 101  Q
    |||||||| ||||||||  |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||  |||| ||||||||||||||    
T  37703532 aagcagaggaagagaggttcaagtatcttagaggagagctccagttggattttggaagttgaccactaaggttataattgaatgacaaatccaatctttg 37703631  T
Q  102 aagattaggtaaagagaggattacatttgacaaattt 138  Q
    |||||||||||||||||||||  || |||||||||||    
T  37703632 aagattaggtaaagagaggatgtcacttgacaaattt 37703668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 37392236 - 37392121
Alignment:
Q  20 ccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagattaggtaaagagag 119  Q
    |||||||||||||||||||||||||||| || |||||||||| ||| |||||    ||||||  ||| ||||| | ||||||||||||||||||||||||    
T  37392236 ccaagtaccttagaggagtgctccagtttgattttggaagtttaccgctaag---ttcattatttgacaaatctagtctttgaagattaggtaaagagag 37392140  T
Q  120 gattacatttgacaaattt 138  Q
    |||  || |||||||||||    
T  37392139 gatggcacttgacaaattt 37392121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 37381621 - 37381495
Alignment:
Q  12 agagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagattaggt 111  Q
    ||||||| |||||||||| | |||||||||||||||||| || ||||||||||  || || |  | ||||||||||||||| | | |||| |||||||||    
T  37381621 agagaggtccaagtacctcaaaggagtgctccagttggatttcggaagttgactgctcagatatttattagatgataaatctagtgtttggagattaggt 37381522  T
Q  112 aaagagaggattacatttgacaaattt 138  Q
    |||||||||||  || |||||||||||    
T  37381521 aaagagaggatgtcacttgacaaattt 37381495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 37429616 - 37429725
Alignment:
Q  13 gagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagattaggta 112  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||  ||||||||||  |||||| | || ||||| | |  ||||||||| ||||    
T  37429616 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttgaagatttggta 37429715  T
Q  113 aagagaggat 122  Q
    ||||||||||    
T  37429716 aagagaggat 37429725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 37412564 - 37412513
Alignment:
Q  10 aaagagaggaccaagtaccttagaggagtgctccagttggactttggaagtt 61  Q
    ||||||||  ||||||||||||||||||||||||||||| || |||||||||    
T  37412564 aaagagagatccaagtaccttagaggagtgctccagttgaacattggaagtt 37412513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 9e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 9e-25
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 24217033 - 24216916
Alignment:
Q  5 cagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaag 104  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| |||||| || ||||| |||||  | ||| ||||| ||||| | | |||||||    
T  24217033 cagagaaagagaggtccaagtaccttaggggagtgctccagttggacgttggaaatttaccacgaaggtcttgattcgatgacaaatctagtttttgaag 24216934  T
Q  105 attaggtaaagagaggat 122  Q
    ||| ||||||||||||||    
T  24216933 atttggtaaagagaggat 24216916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 16842162 - 16842067
Alignment:
Q  12 agagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgataaatccaatctttgaagatt 107  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||||  ||| ||||| | ||||||||||||    
T  16842162 agagaggtacaagtaccttagaggagtgctccagttggattttggaagttgaccactaaggtcttgattatgtgacaaatctagtctttgaagatt 16842067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 14553921 - 14553971
Alignment:
Q  21 caagtaccttagaggagtgctccagttggactttggaagttgaccactaag 71  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  14553921 caagtaccttagaggagtactccagttggattttggaagttgaccactaag 14553971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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