View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5828-4 (Length: 135)
Name: Solexa-NF5828-4
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5828-4 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (8 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 5e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 1847116 - 1846986
Alignment:
| Q |
8 |
actattatgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttat---tggtcatgtcgact |
104 |
Q |
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| T |
1847116 |
actattatgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttattggtggtcatgtcgact |
1847017 |
T |
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| Q |
105 |
ccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
1847016 |
ccgggaagtcaacgacggctggtcatttgat |
1846986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 4620346 - 4620284
Alignment:
| Q |
73 |
tattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
4620346 |
tattaatattgtgtttattggtcatgtcgactctgggaagtcaaccactgctggtcatttgat |
4620284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 2e-38; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 7890635 - 7890735
Alignment:
| Q |
35 |
attcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttga |
134 |
Q |
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| T |
7890635 |
attcaagtttaaggaccaatgagtaggccaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttga |
7890734 |
T |
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| Q |
135 |
t |
135 |
Q |
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| T |
7890735 |
t |
7890735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 7888338 - 7888470
Alignment:
| Q |
15 |
tgtgttgaatttgcagattcattcaagttgaaggactgatgagtaggggaaagtttcc------------tattaacattctgtttattggtcatgtcga |
102 |
Q |
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| T |
7888338 |
tgtgttgaatttgcagattcattcaagtttaaggactaatgagtaggccaaagtttccgcccccggttcctcttaactttctgtttattggtcatgttga |
7888437 |
T |
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| Q |
103 |
ctccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
7888438 |
ttccgggaagtcaaccactgctggtcatttgat |
7888470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 45993084 - 45993180
Alignment:
| Q |
36 |
ttcaagttgaaggactgatgagtaggggaaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcattt |
132 |
Q |
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| T |
45993084 |
ttcaagtttaaggactaatggataaggaaaaggttcctattagcattgtggttattggtcatgtcgactccgggaagtcaaccactactggtcattt |
45993180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 45983332 - 45983403
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
45983332 |
aaaggttcgtattaacattgtggttattggtcatgtggactccgggaagtcaaccactactggtcatttgat |
45983403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 51292280 - 51292209
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
51292280 |
aaaggttcgtattaacattgtgtttattggtcatgtcgactatggaaagtcaaatactgctggtcatttgat |
51292209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 38137489 - 38137551
Alignment:
| Q |
73 |
tattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
38137489 |
tattaacgttgtggttattggtcatgttgactctgggaagtcaactactgctggtcatttgat |
38137551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 40034320 - 40034391
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
40034320 |
aaaggttcatattaacatcgtatttattggtaatgtcgactctgggaagtcaaccactggtggtcatttgat |
40034391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 3301370 - 3301342
Alignment:
| Q |
89 |
attggtcatgtcgactccgggaagtcaac |
117 |
Q |
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| T |
3301370 |
attggtcatgtcgactccgggaagtcaac |
3301342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 34691490 - 34691419
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
34691490 |
aaaggttcatatcaacattgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatttgat |
34691419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 34713902 - 34713831
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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|||| ||| ||| |||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
34713902 |
aaaggttcatatcaacattgtgtttattggtcatgtcaactctgggaagtcaactacggctggtcatttgat |
34713831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 33861504 - 33861451
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaac |
117 |
Q |
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| T |
33861504 |
aaagtttcatattaacattgtggttattggtcatgttgactctgggaagtcaac |
33861451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 16352293 - 16352224
Alignment:
| Q |
64 |
aaagtttcctattaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttg |
133 |
Q |
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| T |
16352293 |
aaaggttcatattaacattgtggttattggtcatgtcaactctgggaagtcaaccaccgccggtcatttg |
16352224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 19964623 - 19964683
Alignment:
| Q |
75 |
ttaacattctgtttattggtcatgtcgactccgggaagtcaacgacggctggtcatttgat |
135 |
Q |
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| T |
19964623 |
ttaacattgtggttattggtcatgttgactctgggaagtcaaccactactggtcacttgat |
19964683 |
T |
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