View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5828-5 (Length: 134)
Name: Solexa-NF5828-5
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5828-5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 100; Significance: 7e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 13108264 - 13108134
Alignment:
| Q |
1 |
cacagacagatattcgaattacatatgaaatccatggatgtaatctgcaaaaagttgcattcagatatacatatacctatagtatgatatggataacatt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13108264 |
cacagacagatattcgaattagatatgaaattcatggatgtaatctgcaaaacgttgcattcaaatatacatataccta---tataatatggataacatt |
13108168 |
T |
|
| Q |
101 |
aagtcgaacaacaaaaaacctagatcttcctctt |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13108167 |
aagtcgaacaacaaaaaacctagatcttcctctt |
13108134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University