View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5828-7 (Length: 131)

Name: Solexa-NF5828-7
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5828-7
Solexa-NF5828-7
[»] chr4 (6 HSPs)
chr4 (5-127)||(10470033-10470152)
chr4 (5-125)||(10483956-10484076)
chr4 (7-121)||(40789349-40789463)
chr4 (60-127)||(5203944-5204011)
chr4 (30-127)||(51302943-51303041)
chr4 (32-104)||(38224664-38224736)
[»] chr2 (2 HSPs)
chr2 (13-127)||(35060865-35060979)
chr2 (13-100)||(3276057-3276144)
[»] chr7 (1 HSPs)
chr7 (19-103)||(29339769-29339853)
[»] chr8 (1 HSPs)
chr8 (30-103)||(18888905-18888978)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-48; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 10470033 - 10470152
Alignment:
Q  5 gaggacaccatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 104  Q
    ||||||| ||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470033 gaggacatcatgacgaagaagttccacatcagaa---gctccgagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 10470129  T
Q  105 gcattggtttgttgaagcatttg 127  Q
    | |||||||||||||||||||||    
T  10470130 ggattggtttgttgaagcatttg 10470152  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 10483956 - 10484076
Alignment:
Q  5 gaggacaccatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 104  Q
    ||||||| |||||||||||||||||||||||||| ||||| || |||||  |||||||||||| ||||||||||| |||||||||||||||||||  |||    
T  10483956 gaggacatcatgacgaagaagttccacatcagaagaagcttcaggctttgccatgtagtctgcccaatggttcccttctctaagagtgtgagaaattgtt 10484055  T
Q  105 gcattggtttgttgaagcatt 125  Q
    |||||| ||||||||||||||    
T  10484056 gcattgatttgttgaagcatt 10484076  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 40789463 - 40789349
Alignment:
Q  7 ggacaccatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgc 106  Q
    ||||| ||||| ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||      
T  40789463 ggacatcatgaagaagaagttccacattagaagaagcttcaagctttgccatgtagtctgcacaatggttcccctctctaagagtgcgagaaaccgttag 40789364  T
Q  107 attggtttgttgaag 121  Q
    |||||||||||||||    
T  40789363 attggtttgttgaag 40789349  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 5203944 - 5204011
Alignment:
Q  60 tagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattggtttgttgaagcatttg 127  Q
    |||| |||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  5203944 tagtttgcacattgattcccctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttg 5204011  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 51302943 - 51303041
Alignment:
Q  30 acatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctct-aagagtgtgagaaaccgttgcattggtttgttgaagcatttg 127  Q
    |||||| || ||||| |||||||| |||| ||||||||||| || ||| ||||||| ||||||||||||||||||| |||||  ||| |||||||||||    
T  51302943 acatcataagaagcttcaagctttgtcatatagtctgcacattgattctcctctcttaagagtgtgagaaaccgttacattgagttgatgaagcatttg 51303041  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 38224736 - 38224664
Alignment:
Q  32 atcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 104  Q
    ||||||| |||||| |||||||  |||  |||||||||| || ||   |||||||||||||||||||||||||    
T  38224736 atcagaagaagctctaagctttgccattaagtctgcacactgatttttctctctaagagtgtgagaaaccgtt 38224664  T

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Target: chr2 (Bit Score: 67; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 35060865 - 35060979
Alignment:
Q  13 catgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattggt 112  Q
    ||||| |||| ||||||||||||||| ||||| | | ||||  |||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  35060865 catgaagaaggagttccacatcagaagaagctactaactttgccatgtagtttgcacaatggttcctctctctaagagtgtgagaaactgttacattggt 35060964  T
Q  113 ttgttgaagcatttg 127  Q
    |||||||||||||||    
T  35060965 ttgttgaagcatttg 35060979  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 3276144 - 3276057
Alignment:
Q  13 catgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaac 100  Q
    ||||| |||||||||| ||||||||| |||||||||| |||  ||| || |||||||| || ||| ||||||||| ||||||||||||    
T  3276144 catgaagaagaagttcaacatcagaagaagctccaagttttgccatataatctgcacattgattctcctctctaaaagtgtgagaaac 3276057  T

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Target: chr7 (Bit Score: 33; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 29339853 - 29339769
Alignment:
Q  19 gaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgt 103  Q
    ||||||| || |||| |||||||| | ||||||||  |||| ||| |||||  || |||||||||||||||| ||||||||||||    
T  29339853 gaagaagatcaacattagaataagattcaagctttgccatgaagtttgcacgctgtttcccctctctaagagcgtgagaaaccgt 29339769  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 18888905 - 18888978
Alignment:
Q  30 acatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgt 103  Q
    ||||||||| |||||||||| ||  ||||| | |||||||  |||||||| |||||||| || |||||||||||    
T  18888905 acatcagaagaagctccaagtttcatcatgaaatctgcactttggttcccatctctaagcgtatgagaaaccgt 18888978  T

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