View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5828-8 (Length: 129)

Name: Solexa-NF5828-8
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5828-8
Solexa-NF5828-8
[»] chr6 (7 HSPs)
chr6 (8-129)||(34882875-34882995)
chr6 (66-113)||(15443691-15443738)
chr6 (66-112)||(13211298-13211344)
chr6 (73-111)||(29711265-29711303)
chr6 (76-107)||(2140503-2140534)
chr6 (66-107)||(17168890-17168931)
chr6 (76-105)||(34446571-34446600)
[»] chr5 (6 HSPs)
chr5 (66-112)||(11596472-11596518)
chr5 (75-107)||(28296333-28296365)
chr5 (78-113)||(22423828-22423863)
chr5 (75-113)||(38749579-38749617)
chr5 (77-106)||(41558706-41558735)
chr5 (75-112)||(43208291-43208328)
[»] chr7 (7 HSPs)
chr7 (75-112)||(2525861-2525898)
chr7 (75-112)||(35238201-35238238)
chr7 (75-112)||(38134423-38134460)
chr7 (76-112)||(44172907-44172943)
chr7 (67-105)||(29769322-29769360)
chr7 (77-111)||(41099759-41099793)
chr7 (79-112)||(18678157-18678190)
[»] chr8 (8 HSPs)
chr8 (66-112)||(9936810-9936856)
chr8 (76-112)||(30068045-30068081)
chr8 (77-113)||(34201062-34201098)
chr8 (78-113)||(8798847-8798882)
chr8 (75-110)||(14230063-14230098)
chr8 (78-112)||(29198496-29198530)
chr8 (73-107)||(34739083-34739117)
chr8 (75-108)||(4114224-4114257)
[»] chr2 (8 HSPs)
chr2 (75-113)||(40681987-40682025)
chr2 (75-112)||(18570977-18571014)
chr2 (76-107)||(30563415-30563446)
chr2 (73-107)||(2073945-2073979)
chr2 (75-105)||(10535783-10535813)
chr2 (66-112)||(31026691-31026737)
chr2 (77-119)||(44605149-44605191)
chr2 (75-112)||(16630800-16630837)
[»] chr4 (16 HSPs)
chr4 (75-112)||(14465311-14465348)
chr4 (75-112)||(18513258-18513295)
chr4 (76-112)||(5654608-5654644)
chr4 (76-112)||(10546154-10546190)
chr4 (68-111)||(25390904-25390947)
chr4 (76-107)||(43188618-43188649)
chr4 (75-105)||(7012071-7012101)
chr4 (73-119)||(11135304-11135350)
chr4 (77-119)||(23915136-23915178)
chr4 (76-113)||(19230325-19230362)
chr4 (76-105)||(20743302-20743331)
chr4 (76-105)||(24846802-24846831)
chr4 (80-113)||(26276025-26276058)
chr4 (76-105)||(32910557-32910586)
chr4 (75-112)||(34589723-34589760)
chr4 (77-106)||(48845148-48845177)
[»] chr1 (6 HSPs)
chr1 (76-113)||(40747789-40747826)
chr1 (76-112)||(11571591-11571627)
chr1 (78-113)||(1262892-1262927)
chr1 (77-112)||(3921674-3921709)
chr1 (75-105)||(42325565-42325595)
chr1 (76-110)||(48785283-48785317)
[»] scaffold0037 (1 HSPs)
scaffold0037 (73-113)||(102908-102948)
[»] chr3 (5 HSPs)
chr3 (75-107)||(9210847-9210879)
chr3 (76-105)||(16789674-16789703)
chr3 (76-105)||(20691325-20691354)
chr3 (76-105)||(21149073-21149102)
chr3 (75-112)||(40150588-40150625)
[»] scaffold0598 (1 HSPs)
scaffold0598 (66-105)||(8077-8116)
[»] scaffold0571 (1 HSPs)
scaffold0571 (76-107)||(7696-7727)
[»] scaffold0007 (1 HSPs)
scaffold0007 (76-113)||(225284-225321)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 3e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 3e-50
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 34882875 - 34882995
Alignment:
Q  8 tcgtgtctatatagaatattggaatatgcaatgaaaagatgataccgaagacgaacaccgtcgatatcgataataatttgagmaaatgacataattcaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |||||||||    
T  34882875 tcgtgtctatatagaatattggaatatgcaatgaaaagatgataccgaagacgaacaccgtccatatcgataataatttgagaaaatga-gtaattcaat 34882973  T
Q  108 ataattccatgtatcagagtcg 129  Q
    ||||||||||| ||||||||||    
T  34882974 ataattccatgcatcagagtcg 34882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 15443691 - 15443738
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattcaatataatt 113  Q
    |||||| ||| ||||||||||||| |||| ||||||||||||||||||    
T  15443691 cgtcgacatcaataataatttgagaaaataacataattcaatataatt 15443738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 13211344 - 13211298
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||| || |||||||||||||| ||||||||||||| ||||||||    
T  13211344 cgtcgacattgataataatttgagaaaatgacataatttaatataat 13211298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 29711265 - 29711303
Alignment:
Q  73 atcgataataatttgagmaaatgacataattcaatataa 111  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  29711265 atcgataataatttgagaaaatgacataattcattataa 29711303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 107
Target Start/End: Complemental strand, 2140534 - 2140503
Alignment:
Q  76 gataataatttgagmaaatgacataattcaat 107  Q
    |||||||||||||| |||||||||||||||||    
T  2140534 gataataatttgagaaaatgacataattcaat 2140503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 17168890 - 17168931
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattcaat 107  Q
    |||||| || |||||||||||||  |||||||||||||||||    
T  17168890 cgtcgacattgataataatttgaaaaaatgacataattcaat 17168931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 34446571 - 34446600
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  34446571 gataataatttgagaaaatgacataattca 34446600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 11596518 - 11596472
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||    
T  11596518 cgtcgataccgataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 28296333 - 28296365
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaat 107  Q
    ||||||||||||||| |||||||||||||||||    
T  28296333 cgataataatttgagaaaatgacataattcaat 28296365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 22423863 - 22423828
Alignment:
Q  78 taataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||||| |||| ||||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataatt 22423828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 38749617 - 38749579
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataatt 113  Q
    ||||||||||||||  ||||||||||||||||| |||||    
T  38749617 cgataataatttgaaaaaatgacataattcaatgtaatt 38749579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 41558735 - 41558706
Alignment:
Q  77 ataataatttgagmaaatgacataattcaa 106  Q
    ||||||||||||| ||||||||||||||||    
T  41558735 ataataatttgagaaaatgacataattcaa 41558706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 43208328 - 43208291
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||| ||||||||| ||||||||||||||||| ||||    
T  43208328 cgatagtaatttgagaaaatgacataattcaatgtaat 43208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 2525898 - 2525861
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2525898 cgataataatttgagcaaatgacataattcaatataat 2525861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 35238238 - 35238201
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  35238238 cgataatattttgagaaaatgacataattcaatataat 35238201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 38134460 - 38134423
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  38134460 cgataataatttgagaaaatgacataattcaatgtaat 38134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 44172943 - 44172907
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaat 44172907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 29769322 - 29769360
Alignment:
Q  67 gtcgatatcgataataatttgagmaaatgacataattca 105  Q
    ||||||||||||||||||||||| ||||||  |||||||    
T  29769322 gtcgatatcgataataatttgagaaaatgatgtaattca 29769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 41099793 - 41099759
Alignment:
Q  77 ataataatttgagmaaatgacataattcaatataa 111  Q
    ||||||||||||| |||||| ||||||||||||||    
T  41099793 ataataatttgagaaaatgatataattcaatataa 41099759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 18678157 - 18678190
Alignment:
Q  79 aataatttgagmaaatgacataattcaatataat 112  Q
    |||| |||||| ||||||||||||||||||||||    
T  18678157 aatattttgagaaaatgacataattcaatataat 18678190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 9936810 - 9936856
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||| |||||||||||||| || |||||| |||||||||||||||    
T  9936810 cgtcgacatcgataataatttaagaaaatgatataattcaatataat 9936856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 30068081 - 30068045
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  30068081 gataataatttgagaaaatgacataattcagtataat 30068045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 34201098 - 34201062
Alignment:
Q  77 ataataatttgagmaaatgacataattcaatataatt 113  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaatt 34201062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 8798882 - 8798847
Alignment:
Q  78 taataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||||| |||| ||||||||||||||||||    
T  8798882 taataatttgagaaaataacataattcaatataatt 8798847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 110
Target Start/End: Complemental strand, 14230098 - 14230063
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatata 110  Q
    ||||||| ||||||| ||||||||||||||||||||    
T  14230098 cgataatcatttgagaaaatgacataattcaatata 14230063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 112
Target Start/End: Complemental strand, 29198530 - 29198496
Alignment:
Q  78 taataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||| ||||||||||||||||| ||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaat 29198496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 34739117 - 34739083
Alignment:
Q  73 atcgataataatttgagmaaatgacataattcaat 107  Q
    |||||||||||| |||| |||||||||||||||||    
T  34739117 atcgataataatatgagaaaatgacataattcaat 34739083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 4114257 - 4114224
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaata 108  Q
    ||||||||||||||| ||||||||||||| ||||    
T  4114257 cgataataatttgagaaaatgacataattgaata 4114224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.0000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 40681987 - 40682025
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataatt 113  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  40681987 cgataataatttgagaaaatgacataattcaatgtaatt 40682025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 18570977 - 18571014
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  18570977 cgataataatttgagaaaatgacataattcaatgtaat 18571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 30563415 - 30563446
Alignment:
Q  76 gataataatttgagmaaatgacataattcaat 107  Q
    |||||||||||||| |||||||||||||||||    
T  30563415 gataataatttgagaaaatgacataattcaat 30563446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 2073945 - 2073979
Alignment:
Q  73 atcgataataatttgagmaaatgacataattcaat 107  Q
    ||||||||||||||||| |||| ||||||||||||    
T  2073945 atcgataataatttgagaaaataacataattcaat 2073979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 10535813 - 10535783
Alignment:
Q  75 cgataataatttgagmaaatgacataattca 105  Q
    ||||||||||||||| |||||||||||||||    
T  10535813 cgataataatttgagaaaatgacataattca 10535783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 31026691 - 31026737
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||| | |||||||||||| || ||||||||||||||||| ||||    
T  31026691 cgtcgagaccgataataatttaagaaaatgacataattcaatgtaat 31026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 44605191 - 44605149
Alignment:
Q  77 ataataatttgagmaaatgacataattcaatataattccatgt 119  Q
    ||||||||||||| |||| |||||||||||| ||||| |||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaattacatgt 44605149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 16630800 - 16630837
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||| || ||||||||||||||||| ||||    
T  16630800 cgataataatttaagaaaatgacataattcaatttaat 16630837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 14465348 - 14465311
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  14465348 cgataataatttgagaaaatgacataattcaatttaat 14465311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 18513295 - 18513258
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  18513295 cgataataatttgagaaaatgacataattcaatgtaat 18513258  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 5654644 - 5654608
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  5654644 gataataatttgagaaaatgacataattcaatgtaat 5654608  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 10546154 - 10546190
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  10546154 gataataatttgagaaaatgacataattcaatgtaat 10546190  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 25390947 - 25390904
Alignment:
Q  68 tcgatatcgataataatttgagmaaatgacataattcaatataa 111  Q
    |||||| | |||||||||| || |||||||||||||||||||||    
T  25390947 tcgataccaataataattttagaaaatgacataattcaatataa 25390904  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 43188618 - 43188649
Alignment:
Q  76 gataataatttgagmaaatgacataattcaat 107  Q
    |||||||||||||| |||||||||||||||||    
T  43188618 gataataatttgagaaaatgacataattcaat 43188649  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 7012071 - 7012101
Alignment:
Q  75 cgataataatttgagmaaatgacataattca 105  Q
    ||||||||||||||| |||||||||||||||    
T  7012071 cgataataatttgagaaaatgacataattca 7012101  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 11135350 - 11135304
Alignment:
Q  73 atcgataataatttgagmaaatgacataattcaatataattccatgt 119  Q
    |||| ||||| |||||| |||| |||||||||||||||||| |||||    
T  11135350 atcgctaatagtttgagaaaattacataattcaatataattacatgt 11135304  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 23915136 - 23915178
Alignment:
Q  77 ataataatttgagmaaatgacataattcaatataattccatgt 119  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||    
T  23915136 ataatcatttgagaaaataacataattcaatataattacatgt 23915178  T

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Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 19230362 - 19230325
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||||||| |||| |||||||||||| |||||    
T  19230362 gataataatttgagaaaataacataattcaatgtaatt 19230325  T

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Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 20743331 - 20743302
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  20743331 gataataatttgagaaaatgacataattca 20743302  T

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Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 24846831 - 24846802
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  24846831 gataataatttgagcaaatgacataattca 24846802  T

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Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 26276058 - 26276025
Alignment:
Q  80 ataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||| ||||||||||||||||| |||||    
T  26276058 ataatttgagaaaatgacataattcaatgtaatt 26276025  T

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Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 32910557 - 32910586
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  32910557 gataataatttgagaaaatgacataattca 32910586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 34589760 - 34589723
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    |||||| |||||||| ||||||||||||||||| ||||    
T  34589760 cgataacaatttgagaaaatgacataattcaatgtaat 34589723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 48845148 - 48845177
Alignment:
Q  77 ataataatttgagmaaatgacataattcaa 106  Q
    ||||||||||||| ||||||||||||||||    
T  48845148 ataataatttgagaaaatgacataattcaa 48845177  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 40747826 - 40747789
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  40747826 gataataatttgagaaaatgacataattcaatgtaatt 40747789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 11571591 - 11571627
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataat 112  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaat 11571627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 1262892 - 1262927
Alignment:
Q  78 taataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||||| |||| ||||||||||||||||||    
T  1262892 taataatttgagaaaatcacataattcaatataatt 1262927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 3921674 - 3921709
Alignment:
Q  77 ataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||| ||||||||||||||||| ||||    
T  3921674 ataataatttgagaaaatgacataattcaatgtaat 3921709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 105
Target Start/End: Original strand, 42325565 - 42325595
Alignment:
Q  75 cgataataatttgagmaaatgacataattca 105  Q
    ||||||||||||||| |||||||||||||||    
T  42325565 cgataataatttgagaaaatgacataattca 42325595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 48785317 - 48785283
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatata 110  Q
    |||||||||||||| |||| |||||||||||||||    
T  48785317 gataataatttgagaaaataacataattcaatata 48785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.000000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 102908 - 102948
Alignment:
Q  73 atcgataataatttgagmaaatgacataattcaatataatt 113  Q
    ||||||||||||||||| |||||| |||||||||| |||||    
T  102908 atcgataataatttgagaaaatgatataattcaatgtaatt 102948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 9210879 - 9210847
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaat 107  Q
    ||||||||||||||| |||||||||||||||||    
T  9210879 cgataataatttgagaaaatgacataattcaat 9210847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 16789703 - 16789674
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  16789703 gataataatttgagaaaatgacataattca 16789674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 20691325 - 20691354
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  20691325 gataataatttgagaaaatgacataattca 20691354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 21149073 - 21149102
Alignment:
Q  76 gataataatttgagmaaatgacataattca 105  Q
    |||||||||||||| |||||||||||||||    
T  21149073 gataataatttgagaaaatgacataattca 21149102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 40150625 - 40150588
Alignment:
Q  75 cgataataatttgagmaaatgacataattcaatataat 112  Q
    ||||||||||||||| |||||| |||||||||| ||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaat 40150588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 8116 - 8077
Alignment:
Q  66 cgtcgatatcgataataatttgagmaaatgacataattca 105  Q
    ||||||||  |||||||||||||| |||||||||||||||    
T  8116 cgtcgatacggataataatttgagaaaatgacataattca 8077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 107
Target Start/End: Original strand, 7696 - 7727
Alignment:
Q  76 gataataatttgagmaaatgacataattcaat 107  Q
    |||||||||||||| |||||||||||||||||    
T  7696 gataataatttgagaaaatgacataattcaat 7727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 225321 - 225284
Alignment:
Q  76 gataataatttgagmaaatgacataattcaatataatt 113  Q
    |||||||||||||| |||||||||||| |||| |||||    
T  225321 gataataatttgagaaaatgacataatacaatgtaatt 225284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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