View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5829-11 (Length: 182)
Name: Solexa-NF5829-11
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5829-11 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0217 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 33685933 - 33685754
Alignment:
| Q |
7 |
agttacttaagagacaagtaactaatcctaacaaactaaacaatgataaaagtagtttgaattacaaactaacatttctccttaattcaaactctcaaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
33685933 |
agttacttaagagacaagtaactaatcctaacaaactaaacaatgataaaagtagtttgaattacaaactaacattcctccttaattcaaactcttaaag |
33685834 |
T |
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| Q |
107 |
caaactactcccaattc----ataagcttcagaaattgggttcttttgactggtttagtgaagatatctgcaacttgatc |
182 |
Q |
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| T |
33685833 |
caaactactcccaattctcttataagcttcagaaattgggttcttttgactggtttagtgaagatatctgcaacttgatc |
33685754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 33702987 - 33702808
Alignment:
| Q |
7 |
agttacttaagagacaagtaactaatcctaacaaactaaacaatgataaaagtagtttgaattacaaactaacatttctccttaattcaaactctcaaag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
33702987 |
agttacttaagagacaagtaactaatcctaacaaactaaacaatgataaaagtagtttgaattacaaactaacattcctccttaattcaaactcttaaag |
33702888 |
T |
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| Q |
107 |
caaactactcccaattc----ataagcttcagaaattgggttcttttgactggtttagtgaagatatctgcaacttgatc |
182 |
Q |
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| T |
33702887 |
caaactactcccaattctcttataagcttcagaaattgggttcttttgactggtttagtgaagatatctgcaacttgatc |
33702808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 7295786 - 7295684
Alignment:
| Q |
21 |
caagtaactaatcctaacaaactaaacaatgataaaagtagtttgaattacaaactaacatttctccttaattcaaactctcaaagcaaactactcccaa |
120 |
Q |
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||||||||||| ||||||||||||||||| || | |||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||| |
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| T |
7295786 |
caagtaactaaccctaacaaactaaacaaacatgattaaggtttgaattacaaactaatactcctccttaattcaaactatcaaagcaaactactcccaa |
7295687 |
T |
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| Q |
121 |
ttc |
123 |
Q |
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||| |
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| T |
7295686 |
ttc |
7295684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 39736313 - 39736209
Alignment:
| Q |
62 |
tttgaattacaaactaacatttctccttaattcaaactctcaaagcaaactactcccaattc----ataagcttcagaaattgggttcttttgactggtt |
157 |
Q |
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| T |
39736313 |
tttgaattacaaactgaaattcctccttaattcaaactctcaaagcaaactactctcaattctcttctaagcttcagaaattgggttcttttgactggtt |
39736214 |
T |
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| Q |
158 |
tagtg |
162 |
Q |
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||||| |
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| T |
39736213 |
tagtg |
39736209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 3032 - 2907
Alignment:
| Q |
61 |
gtttgaattacaaactaacatttctccttaattcaaactctcaaagcaaactactcccaattc----ataagcttcagaaattgggttcttttgactggt |
156 |
Q |
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|||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||| |||| |||| |||||||| |||||||| ||| |
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| T |
3032 |
gtttgaattacaaactaatattcgtccttaattcaaactatcaaaggaaactactcccaattctcttctaagtttcaaaaattgggcccttttgacaggt |
2933 |
T |
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| Q |
157 |
ttagtgaagatatctgcaacttgatc |
182 |
Q |
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|||||||| || ||||| || ||||| |
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| T |
2932 |
ttagtgaaaatgtctgccacatgatc |
2907 |
T |
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