View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5829-20 (Length: 129)
Name: Solexa-NF5829-20
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5829-20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 5e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 11803598 - 11803717
Alignment:
| Q |
10 |
ggtaaaagaagaagaaacctttttccaacaattttggagcattgtaggcagaaacgtcatttcctttgctctgaatgcactaaatgatggagcgaatcca |
109 |
Q |
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| T |
11803598 |
ggtaaaagaagaagaaacctttttccaacaattttggagcattgtaggcagaaacgtcatttcctttgctctgaatgtactaaatgatggagcgaatcca |
11803697 |
T |
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| Q |
110 |
ggcagccttaatcatacatt |
129 |
Q |
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| T |
11803698 |
ggtagccttaatcatacatt |
11803717 |
T |
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Target: chr1 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 20778122 - 20778220
Alignment:
| Q |
28 |
ctttttccaacaattttggagcattgtaggcagaaacgtcatttcctttgctctgaatgcactaaatgatggagcgaatccaggcagccttaatcatac |
126 |
Q |
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| T |
20778122 |
ctttttccaacaattttggagcatagtaggcagagacatcacttcctttgcactaaatgtactaaacgatggagtgaatccaggtaacattaatcatac |
20778220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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