View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5829-27 (Length: 104)
Name: Solexa-NF5829-27
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5829-27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 88; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 22681709 - 22681618
Alignment:
| Q |
10 |
tggatctgtggatactgacactgattggccctctactccatcctctcttataggagtgtagacggccaccaacttatacccaacatcaccaa |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22681709 |
tggatctgtagatactgacactgattggccctctactccatcctctcttataggagtgtagacggccaccaacttatacccaacatcaccaa |
22681618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 21211777 - 21211864
Alignment:
| Q |
10 |
tggatctgtggatactgacactgattggccctctactccatcctctcttataggagtgtagacggccaccaacttatacccaacatca |
97 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
21211777 |
tggatctgtggatacagacactgattggccctctactccatcctctcttacaggagtgtagatggccaccaacctatagccaacatca |
21211864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University