View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5829-33 (Length: 45)
Name: Solexa-NF5829-33
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5829-33 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 38; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 10987926 - 10987963
Alignment:
| Q |
8 |
caaattacctggacgacgacaatgaaggtggttatttt |
45 |
Q |
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| T |
10987926 |
caaattacctggacgacgacaatgaaggtggttatttt |
10987963 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 11019094 - 11019131
Alignment:
| Q |
8 |
caaattacctggacgacgacaatgaaggtggttatttt |
45 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
11019094 |
caaattacctggacgacgacaatgaaggtggttatttt |
11019131 |
T |
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