View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5829-4 (Length: 227)
Name: Solexa-NF5829-4
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5829-4 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 19242411 - 19242205
Alignment:
| Q |
8 |
tcatcctccatagaaaaaccaataggaaggttaagccaccctttagcacaagtccaatccattacatcatgctttgcaacccgcacagcattgctaatac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19242411 |
tcatcctccatagaaaaaccaataggaaggttaagccaccctttagcacaagtccaatccattacatcatgctttgcaacctgcacagcattgctaatat |
19242312 |
T |
|
| Q |
108 |
tactgataagaaaatcctgcacaggatcaagcttcccatggcaagcatcacaaaccctctgcggattcctttcccgaaacgcaacaggcaacaaacacct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
19242311 |
tactgataagaaaatcctgcacaggatcaagcttcccatggcaagcatcacaaaccctctgcggattcctttccctaaacgcaactggcaacaaacacct |
19242212 |
T |
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| Q |
208 |
ccccttc |
214 |
Q |
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||||||| |
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| T |
19242211 |
ccccttc |
19242205 |
T |
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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 51597871 - 51598045
Alignment:
| Q |
8 |
tcatcctccatagaaaaaccaataggaaggttaagccaccctttagcacaagtccaatccattacatcatgctttgcaacccgcacagcattgctaatac |
107 |
Q |
| |
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|||| ||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| || || ||||||||||||| || |
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| T |
51597871 |
tcatgctccatagatataccaataggaagattaagccaccctctagcacaagtccaatccatgacatcatgcttagctgcctgcacagcattgcttatgg |
51597970 |
T |
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| Q |
108 |
tactgataagaaaatcctgcacaggatcaagcttcccatggcaagcatcacaaaccctctgcggattcctttccc |
182 |
Q |
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| T |
51597971 |
tgttgataagaacgccttgtaaaggatcaagcctatcatagcaggaatcacagaccctctgaggattcctttccc |
51598045 |
T |
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