View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5829-8 (Length: 202)
Name: Solexa-NF5829-8
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5829-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 49202892 - 49203050
Alignment:
| Q |
44 |
gagaagaaactgaaggtagtcctcatcagcccaccatcttcaccagttttgctaccagtaaatggtgatatcaaacaggatccgtccaaccaaattaatg |
143 |
Q |
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| T |
49202892 |
gagaagaaactgaaggtagtcctcatcagcccaccatcttcaccagttttgctaccagtaaatggtgatatcaaacaggatccgtccaaccaaattaatg |
49202991 |
T |
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| Q |
144 |
tgctaaaagatagggtgcccagtggaattgaaaacatacctccacctctaagagtgagc |
202 |
Q |
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| T |
49202992 |
tgctaaaagatagggtgcccagtggaattgaaaacatacctccacctctaagagtgagc |
49203050 |
T |
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