View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5830-11 (Length: 121)

Name: Solexa-NF5830-11
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5830-11
Solexa-NF5830-11
[»] chr6 (2 HSPs)
chr6 (8-121)||(11320523-11320636)
chr6 (52-119)||(6932844-6932911)
[»] chr1 (8 HSPs)
chr1 (10-108)||(17776521-17776619)
chr1 (17-74)||(32808539-32808596)
chr1 (17-119)||(18535269-18535371)
chr1 (59-105)||(26028499-26028545)
chr1 (17-119)||(31093237-31093339)
chr1 (17-119)||(37357019-37357121)
chr1 (50-119)||(27417733-27417802)
chr1 (38-106)||(28519066-28519134)
[»] chr7 (7 HSPs)
chr7 (10-106)||(8049264-8049360)
chr7 (50-119)||(5998125-5998194)
chr7 (10-73)||(14997768-14997830)
chr7 (10-73)||(20362419-20362482)
chr7 (17-119)||(340583-340685)
chr7 (17-106)||(8247877-8247966)
chr7 (23-98)||(28106518-28106593)
[»] chr4 (4 HSPs)
chr4 (10-105)||(6585174-6585268)
chr4 (25-74)||(26467910-26467959)
chr4 (17-73)||(9397863-9397919)
chr4 (10-52)||(23630926-23630968)
[»] chr3 (3 HSPs)
chr3 (10-105)||(10937061-10937156)
chr3 (17-119)||(21883191-21883293)
chr3 (17-119)||(49487014-49487116)
[»] chr2 (6 HSPs)
chr2 (10-106)||(13494812-13494908)
chr2 (38-119)||(43287679-43287760)
chr2 (17-92)||(26539073-26539148)
chr2 (19-57)||(9070603-9070641)
chr2 (10-60)||(17842813-17842863)
chr2 (30-73)||(23453087-23453130)
[»] chr5 (4 HSPs)
chr5 (14-119)||(16673273-16673378)
chr5 (17-119)||(35264830-35264932)
chr5 (17-105)||(21171490-21171578)
chr5 (10-105)||(18772910-18773005)
[»] scaffold1457 (1 HSPs)
scaffold1457 (17-73)||(1296-1352)
[»] scaffold0102 (1 HSPs)
scaffold0102 (38-106)||(13814-13881)
[»] scaffold0014 (1 HSPs)
scaffold0014 (17-105)||(111642-111730)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 4e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 11320523 - 11320636
Alignment:
Q  8 tattcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||    
T  11320523 tattcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctcttcaccatggttttgtcccactgagttttct 11320622  T
Q  108 ttgtagggttttaa 121  Q
    ||||||||||||||    
T  11320623 ttgtagggttttaa 11320636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 6932844 - 6932911
Alignment:
Q  52 aaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggtttt 119  Q
    |||||| |||||||||||||||| ||| ||||| ||||| || |||||||||||| | ||| ||||||    
T  6932844 aaatatgttctgcactctttttcctttaactatagttttatctcactgagttttcctggtaaggtttt 6932911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 5e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 17776619 - 17776521
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctt 108  Q
    ||||| |||||| |||||||||||||||||||||  |||||||||||||||||||||  ||||||| || ||  ||||||||||| |||||||||||||    
T  17776619 ttcataatctcatagatgattgtttggttgagggtgagaaataaatatattctgcacaatttttctcttcaccgtggttttgtccaactgagttttctt 17776521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 32808539 - 32808596
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttc 74  Q
    |||| |||||| |||||| |||||| || |||||||||||||||||||||||||||||    
T  32808539 tctcgaagatggttgtttagttgagagggagaaataaatatattctgcactctttttc 32808596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 18535371 - 18535269
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| ||||||||| | ||| |||    
T  18535371 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggt 18535272  T
Q  117 ttt 119  Q
    |||    
T  18535271 ttt 18535269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 26028499 - 26028545
Alignment:
Q  59 ttctgcactctttttctttttactatggttttgtcccactgagtttt 105  Q
    ||||||||||||||||  || ||||||||||| ||||||||||||||    
T  26028499 ttctgcactctttttcccttaactatggttttatcccactgagtttt 26028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 31093339 - 31093237
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||| | ||| |||    
T  31093339 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggt 31093240  T
Q  117 ttt 119  Q
    |||    
T  31093239 ttt 31093237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 37357121 - 37357019
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||| | ||| |||    
T  37357121 tctcatagatgattgtctttatgagggggagacataaatgtcttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggt 37357022  T
Q  117 ttt 119  Q
    |||    
T  37357021 ttt 37357019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 27417802 - 27417733
Alignment:
Q  50 ataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggtttt 119  Q
    ||||||||||| |||||||||||||  || || ||||||||||||| | |||||||| | ||| ||||||    
T  27417802 ataaatatattttgcactctttttcccttcaccatggttttgtcccgccgagttttcctagtaaggtttt 27417733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 28519066 - 28519134
Alignment:
Q  38 tgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttc 106  Q
    ||||||| |||||||||| | ||||||||||||||||| || || | |||||| ||||| || ||||||    
T  28519066 tgagggggagaaataaatgtgttctgcactctttttctcttcaccaaggttttatcccattgggttttc 28519134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 8049360 - 8049264
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttc 106  Q
    |||||| ||||  ||||||||| ||| |||||||| ||| ||||||||||| |||||||| ||| | ||||| ||||||||||||||||||||||||    
T  8049360 ttcatcgtctctgagatgattgattgattgagggggagatataaatatattttgcactctatttttctttaccatggttttgtcccactgagttttc 8049264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 5998125 - 5998194
Alignment:
Q  50 ataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggtttt 119  Q
    |||||| | ||||||| |||||||||||| || |||||||| ||||| ||||||||||| ||| ||||||    
T  5998125 ataaatgtcttctgcaatctttttcttttaacaatggttttatcccattgagttttcttagtaaggtttt 5998194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 14997830 - 14997768
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactcttttt 73  Q
    |||||||||||| |||||||| |||| |||||||| ||| || |||||||| ||||||||||||    
T  14997830 ttcatcatctcagagatgatt-tttgattgagggggagatatgaatatattttgcactcttttt 14997768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 20362419 - 20362482
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactcttttt 73  Q
    |||||| ||||| | ||||||||||| |||||||| | | ||||||||||| ||||||||||||    
T  20362419 ttcatcctctcataaatgattgtttgattgagggggaaatataaatatattttgcactcttttt 20362482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 340685 - 340583
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||| | ||| |||    
T  340685 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggt 340586  T
Q  117 ttt 119  Q
    |||    
T  340585 ttt 340583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 8247877 - 8247966
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttc 106  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || ||||||    
T  8247877 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttc 8247966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 28106518 - 28106593
Alignment:
Q  23 agatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccact 98  Q
    |||||||||||||||||| ||| ||| ||||||||||  |||| | ||||||  || || || |||||||||||||    
T  28106518 agatgattgtttggttgaaggggagacataaatatatcttgcattgtttttcccttcaccatagttttgtcccact 28106593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 6585268 - 6585174
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagtttt 105  Q
    |||||| ||| | ||||||||||||| | |||||| ||| ||||||||||| |||||||||||||  || || |||||||||||||||| ||||||    
T  6585268 ttcatcgtctaagagatgattgtttgat-gagggggagatataaatatattttgcactctttttcccttaaccatggttttgtcccacttagtttt 6585174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 26467959 - 26467910
Alignment:
Q  25 atgattgtttggttgaggggcagaaataaatatattctgcactctttttc 74  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  26467959 atgattgtttggttaagggggagaaataaatatattatgcactctttttc 26467910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 9397863 - 9397919
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactcttttt 73  Q
    ||||| |||||||| ||||||||||||| ||||||||| || || ||||||||||||    
T  9397863 tctcatagatgattatttggttgagggggagaaataaagattttatgcactcttttt 9397919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 23630968 - 23630926
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaata 52  Q
    |||||| ||||| |||||||||||||||||||||| |||||||    
T  23630968 ttcatcgtctcagagatgattgtttggttgagggggagaaata 23630926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 10937061 - 10937156
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagtttt 105  Q
    |||||| ||||| |||||| |||||| |||||||| ||| ||||||||||| ||||||||| |||  || || |||||||||||||| || |||||    
T  10937061 ttcatcgtctcagagatgaatgtttgattgagggggagatataaatatattttgcactcttcttcccttcaccatggttttgtcccaatgggtttt 10937156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21883191 - 21883293
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||||| ||| |||    
T  21883191 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcttggtaaggt 21883290  T
Q  117 ttt 119  Q
    |||    
T  21883291 ttt 21883293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 49487116 - 49487014
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||| | ||| |||    
T  49487116 tctcatagatgattgtctttatgaggggtagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggt 49487017  T
Q  117 ttt 119  Q
    |||    
T  49487016 ttt 49487014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 13494812 - 13494908
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttc 106  Q
    ||||||||||   |||||||||||||| ||| ||  ||| |||||||||||||||||||| ||| | || || |||||||||| |||||||| ||||    
T  13494812 ttcatcatcttggagatgattgtttggatgaaggagagatataaatatattctgcactctatttttcttcaccatggttttgttccactgaggtttc 13494908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 43287760 - 43287679
Alignment:
Q  38 tgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggtttt 119  Q
    ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| ||||||||| | ||| ||||||    
T  43287760 tgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgagttttcctggtaaggtttt 43287679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 26539148 - 26539073
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgt 92  Q
    |||||||||||||||||||| ||||| | ||| ||||||||||  |||||| ||||||  || || ||||||||||    
T  26539148 tctcaaagatgattgtttggatgaggaggagatataaatatatcttgcactatttttcccttcaccatggttttgt 26539073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 9070641 - 9070603
Alignment:
Q  19 tcaaagatgattgtttggttgaggggcagaaataaatat 57  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  9070641 tcaaaaatgattgtttggttgagggggagaaataaatat 9070603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 17842813 - 17842863
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatatt 60  Q
    |||||| | ||| ||||||||||||||||||| || |||||||||||||||    
T  17842813 ttcatcgtatcagagatgattgtttggttgagagggagaaataaatatatt 17842863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 23453087 - 23453130
Alignment:
Q  30 tgtttggttgaggggcagaaataaatatattctgcactcttttt 73  Q
    |||||||||||| || ||||||||||||| | ||||||||||||    
T  23453087 tgtttggttgagagggagaaataaatatagtatgcactcttttt 23453130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 16673273 - 16673378
Alignment:
Q  14 tcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtag 113  Q
    |||||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||| | |||     
T  16673273 tcatctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaa 16673372  T
Q  114 ggtttt 119  Q
    ||||||    
T  16673373 ggtttt 16673378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 35264932 - 35264830
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttctttgtagggt 116  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||| | ||| |||    
T  35264932 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggttttcctggtaaggt 35264833  T
Q  117 ttt 119  Q
    |||    
T  35264832 ttt 35264830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 21171578 - 21171490
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagtttt 105  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||    
T  21171578 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggtttt 21171490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 18773005 - 18772910
Alignment:
Q  10 ttcatcatctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagtttt 105  Q
    |||||| ||| | ||||||||||||| |||| ||| ||| ||||||||||  || ||||||||||  || || ||| ||||||| ||||| |||||    
T  18773005 ttcatcgtctgagagatgattgtttgattgacggggagatataaatatatcttgaactctttttcccttcaccatgattttgtctcactgggtttt 18772910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1457 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold1457
Description:

Target: scaffold1457; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 1352 - 1296
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactcttttt 73  Q
    ||||| || ||||||||| ||||||||  | |||||||||||||||||| |||||||    
T  1352 tctcataggtgattgtttagttgagggaaataaataaatatattctgcaatcttttt 1296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 13814 - 13881
Alignment:
Q  38 tgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagttttc 106  Q
    ||||||| |||||||||| | ||||||||||||||||  || || |||||||||||||| || ||||||    
T  13814 tgagggggagaaataaatgtgttctgcactctttttc-cttaaccatggttttgtcccattgggttttc 13881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 111642 - 111730
Alignment:
Q  17 tctcaaagatgattgtttggttgaggggcagaaataaatatattctgcactctttttctttttactatggttttgtcccactgagtttt 105  Q
    ||||| |||||||||| |   ||||||| ||| |||||| | ||||||||||||||||  || || |||||||||||||| || |||||    
T  111642 tctcatagatgattgtctttatgagggggagacataaatgtgttctgcactctttttcccttaaccatggttttgtcccattgggtttt 111730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University