View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5830-16 (Length: 78)
Name: Solexa-NF5830-16
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5830-16 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 1901245 - 1901315
Alignment:
| Q |
8 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataatgtgtcattgtattcctgcaaggaaa |
78 |
Q |
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| T |
1901245 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataaggtgtcattgtattcctgcaaggaaa |
1901315 |
T |
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Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-30
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 1910691 - 1910761
Alignment:
| Q |
8 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataatgtgtcattgtattcctgcaaggaaa |
78 |
Q |
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| T |
1910691 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataaggtgtcattgtattcctgcaaggaaa |
1910761 |
T |
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Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 1894401 - 1894468
Alignment:
| Q |
8 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataatgtgtcattgtattcctgcaagg |
75 |
Q |
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| T |
1894401 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataaggtgtcattgtattcctgcaagg |
1894468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 1903847 - 1903914
Alignment:
| Q |
8 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataatgtgtcattgtattcctgcaagg |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1903847 |
ataccttgagcagttggtcagcatggcaaggtaactgatcaataaggtgtcattgtattcctgcaagg |
1903914 |
T |
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