View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5830-2 (Length: 171)
Name: Solexa-NF5830-2
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5830-2 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 3e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 8568014 - 8567854
Alignment:
| Q |
8 |
cttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcag |
107 |
Q |
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| T |
8568014 |
cttccaccaaccctttacgaaagcagcctctgaaatctcttgaagccaacctctgaatagtcacttgaaagacagacgaaagaaatgcccccgcaatcag |
8567915 |
T |
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| Q |
108 |
ctctgccatgatattgagcacaaaggaagggtctcaagatctgagtgcgaaacgcaagcct |
168 |
Q |
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| T |
8567914 |
ctctgccatgatattgagcacaaatgaagggtctcaagatctgaatgtgatacgcaagcct |
8567854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 8472557 - 8472641
Alignment:
| Q |
38 |
tgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcagctctgccatgatatt |
122 |
Q |
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| T |
8472557 |
tgaaatctcttgaggcaatgctctgaagagtgacttgaaagaatgatgaaagaaatgctccaccaatcaactctgccatgatatt |
8472641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 6590390 - 6590307
Alignment:
| Q |
36 |
tctgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcagctctgccatgat |
119 |
Q |
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| T |
6590390 |
tctgaaatctctagaagccaacttctcacgaatcactaaaaagacagacgaaagaaatgccccatcaataacccctgccatgat |
6590307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 7751089 - 7751152
Alignment:
| Q |
35 |
ctctgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccc |
98 |
Q |
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| T |
7751089 |
ctctgaaatcttgagaagccaacctctctcgaatcacttgaaagacagacgaaagaaatgcccc |
7751152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 6572328 - 6572243
Alignment:
| Q |
38 |
tgaaatctcttgaagccaacctctgaatagtcacttgaaagacagatgaaagaaatgcccccgcaatcagctctgccatgatattg |
123 |
Q |
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| T |
6572328 |
tgaaatctcttgaggcaaacctctcaagagtgacttgaaagaacgacgaaagaaatgctccagcaatcagctctgccatgatattg |
6572243 |
T |
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