View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5830-3 (Length: 166)

Name: Solexa-NF5830-3
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5830-3
Solexa-NF5830-3
[»] chr3 (15 HSPs)
chr3 (1-166)||(1902172-1902338)
chr3 (1-166)||(1911618-1911784)
chr3 (13-153)||(21984333-21984474)
chr3 (41-162)||(54393304-54393428)
chr3 (85-162)||(7729832-7729908)
chr3 (94-158)||(11027261-11027325)
chr3 (71-162)||(35864243-35864334)
chr3 (5-103)||(44441600-44441699)
chr3 (5-162)||(10480326-10480486)
chr3 (100-162)||(34962274-34962337)
chr3 (100-162)||(49600729-49600791)
chr3 (61-162)||(52259730-52259831)
chr3 (119-162)||(31339974-31340017)
chr3 (100-161)||(44111249-44111310)
chr3 (5-32)||(54394185-54394212)
[»] chr6 (4 HSPs)
chr6 (44-162)||(6822518-6822636)
chr6 (63-162)||(33106823-33106920)
chr6 (107-162)||(18250878-18250933)
chr6 (63-143)||(6901617-6901697)
[»] chr5 (8 HSPs)
chr5 (5-162)||(15726821-15726978)
chr5 (5-158)||(22399404-22399557)
chr5 (5-162)||(15810665-15810823)
chr5 (13-153)||(29368448-29368589)
chr5 (104-154)||(17229004-17229054)
chr5 (114-158)||(4930660-4930704)
chr5 (93-137)||(27343174-27343218)
chr5 (85-127)||(40909995-40910037)
[»] chr4 (8 HSPs)
chr4 (8-162)||(47552043-47552200)
chr4 (41-135)||(22087819-22087913)
chr4 (9-103)||(26333241-26333336)
chr4 (100-162)||(46732653-46732714)
chr4 (61-162)||(27907223-27907322)
chr4 (111-153)||(13035532-13035574)
chr4 (101-158)||(24368035-24368092)
chr4 (102-162)||(6495752-6495814)
[»] chr1 (8 HSPs)
chr1 (5-162)||(27850394-27850552)
chr1 (49-162)||(30294091-30294204)
chr1 (5-103)||(46396620-46396719)
chr1 (5-106)||(1282175-1282277)
chr1 (5-106)||(1283206-1283308)
chr1 (72-162)||(37244915-37245005)
chr1 (100-160)||(29095842-29095902)
chr1 (130-162)||(42772340-42772372)
[»] chr8 (8 HSPs)
chr8 (53-162)||(40381594-40381703)
chr8 (41-159)||(37728453-37728571)
chr8 (18-162)||(42164059-42164204)
chr8 (9-161)||(3310494-3310646)
chr8 (5-96)||(1336109-1336201)
chr8 (100-162)||(2537200-2537262)
chr8 (63-162)||(12585655-12585754)
chr8 (5-162)||(16340159-16340314)
[»] chr7 (4 HSPs)
chr7 (14-159)||(23756643-23756791)
chr7 (63-162)||(22972903-22973002)
chr7 (105-162)||(33338293-33338348)
chr7 (100-162)||(33758450-33758512)
[»] chr2 (5 HSPs)
chr2 (41-162)||(28529102-28529223)
chr2 (85-157)||(42071417-42071489)
chr2 (85-162)||(44718840-44718917)
chr2 (58-135)||(21490307-21490384)
chr2 (100-162)||(7813564-7813624)
[»] scaffold0245 (1 HSPs)
scaffold0245 (5-106)||(7855-7957)
[»] scaffold0229 (1 HSPs)
scaffold0229 (5-106)||(8183-8285)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 3e-80; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 1902338 - 1902172
Alignment:
Q  1 cagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 99  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902338 cagagaaggatccaggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 1902239  T
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1902238 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatt 1902172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 1911784 - 1911618
Alignment:
Q  1 cagagacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 99  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911784 cagagaaggatccaggatttttgaatagtgggtgcaccatatataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaactta 1911685  T
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1911684 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatt 1911618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 21984474 - 21984333
Alignment:
Q  13 caggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttct 111  Q
    |||||||||||| || |||| ||| ||| ||||||||||| ||||| ||||||||||||| ||  ||||||| |||||| ||||||| ||||| ||||||    
T  21984474 caggatttttgattattgggggcatcatatataaaaatttgtagcattaataattgtcctctagaatttttcatattattgaaactttgaatggttttct 21984375  T
Q  112 cattttcaatatcaatgaaaatatctttctctatataaataa 153  Q
    |||||||||||||||| ||| ||| ||||| |||||||||||    
T  21984374 cattttcaatatcaataaaagtatatttctttatataaataa 21984333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 54393428 - 54393304
Alignment:
Q  41 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaata---tct 137  Q
    ||||||||||| ||||| ||| ||||||||| || |||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||| |     |    
T  54393428 tataaaaatttgtagcattaaaaattgtcctctacgattattcatattatggaaactttgaatgattttctcattttcaatatcaataaaaaaaaacatt 54393329  T
Q  138 ttctctatataaataactaaacaat 162  Q
    || ||||||||||||||||||||||    
T  54393328 ttatctatataaataactaaacaat 54393304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 7729908 - 7729832
Alignment:
Q  85 tattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||||| || ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  7729908 tattatggaaattttgaatgattt-ctcattttcaatatcaataaaaatatatttctctatataaataattaaacaat 7729832  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 11027325 - 11027261
Alignment:
Q  94 aacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaa 158  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||||    
T  11027325 aactttgaatgattttatcattttcaatatcaataaaaatatcttacactatataaataactaaa 11027261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 71 - 162
Target Start/End: Complemental strand, 35864334 - 35864243
Alignment:
Q  71 tttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatga-aaatatctttctctatataaataactaaacaat 162  Q
    ||||||||||||| ||||||||||||||  ||||||||| | |||||||||| ||| || || |||||||||||||||||| |||||||||||    
T  35864334 tttatgatttttcatattatggaaactttcaatgatttttttattttcaata-caaggagaagtatctttctctatataaacaactaaacaat 35864243  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 44441600 - 44441699
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||  |||| || ||||||||||| ||| | ||||||||||||| || |||| ||| |||||| ||||||| ||||    
T  44441600 gacggatccaggatttttgaatagtggaggcactatatataaaaatttgtagtattaataattgtcctctacgattattcatattattgaaactttgaat 44441699  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 10480326 - 10480486
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcc-tattatggaaacttagaa 102  Q
    ||||||| || ||||||||||||||||  |||| || |||||||||||  |  | ||||||||  | | |||||||||| | | ||||| |||||| |||    
T  10480326 gacggattcatgatttttgaatagtggaggcaccatatataaaaatttgaaatagtaataattaacttctatgattttttcattttatgaaaactttgaa 10480425  T
Q  103 tgatttt-ctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    | ||||| | ||||||| |||||||| ||||  | ||||||||||||||||||||||||||    
T  10480426 ttatttttcgcattttcgatatcaattaaaacctttttctctatataaataactaaacaat 10480486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 34962274 - 34962337
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaa-tatctttctctatataaataactaaacaat 162  Q
    ||||||||||||| |||||||||||||| |||| |||||   ||||||||||||||||||||||    
T  34962274 gaatgattttctcgttttcaatatcaataaaaagtatctcattctatataaataactaaacaat 34962337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 49600729 - 49600791
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    |||||||||||||||||||||| ||||| ||||| ||| | ||||||||| |||||| |||||    
T  49600729 gaatgattttctcattttcaatctcaataaaaatctctctttctatataagtaactagacaat 49600791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 52259831 - 52259730
Alignment:
Q  61 ataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaaca 160  Q
    ||||||||||| || ||| |||  |||| | ||||| | |||||||||||||||| ||||||||||| |||||| ||  ||| ||||||| ||| |||||    
T  52259831 ataattgtcctctacgatgttttatattctagaaacattgaatgattttctcattctcaatatcaataaaaatacctccctccatataaacaaccaaaca 52259732  T
Q  161 at 162  Q
    ||    
T  52259731 at 52259730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 31340017 - 31339974
Alignment:
Q  119 aatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||    
T  31340017 aatatcaataaaaatatctttctcaatataattaactaaacaat 31339974  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 44111249 - 44111310
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaa 161  Q
    |||| ||||| |||||||| || ||||| ||||||||  ||||||||||| |||||||||||    
T  44111249 gaataattttttcattttcgatctcaataaaaatatcactctctatataagtaactaaacaa 44111310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 32
Target Start/End: Complemental strand, 54394212 - 54394185
Alignment:
Q  5 gacggatccaggatttttgaatagtggg 32  Q
    ||||||||||||||||||||||||||||    
T  54394212 gacggatccaggatttttgaatagtggg 54394185  T

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Target: chr6 (Bit Score: 75; Significance: 8e-35; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 6822518 - 6822636
Alignment:
Q  44 aaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctct 143  Q
    |||||||| ||||| ||||||||||||||||  ||||||| |||||||||||||| |||||||||  ||||||||||||||||| ||||| ||||||| |    
T  6822518 aaaaatttgtagcattaataattgtcctttacaatttttcatattatggaaactttgaatgatttgttcattttcaatatcaataaaaatttctttcttt 6822617  T
Q  144 atataaataactaaacaat 162  Q
    |||||||||||||||||||    
T  6822618 atataaataactaaacaat 6822636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 33106920 - 33106823
Alignment:
Q  63 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    |||| ||||||| |||||||  ||||||| ||| || ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  33106920 aattatcctttacgattttta-tattatgtaaattttgaatgattt-ctcattttcaatatcaataaaaatatatttctctatataaataactaaacaat 33106823  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 18250933 - 18250878
Alignment:
Q  107 tttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  18250933 tttctcattttgaatattaataaaaatatttttctctatataaataactaaacaat 18250878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 6901697 - 6901617
Alignment:
Q  63 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctct 143  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| |||||    
T  6901697 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctct 6901617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 15726821 - 15726978
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    ||||||| ||| |||||| ||||||||| |||| || || |||||||| ||||| ||||||||||||| ||| ||||||| |||||||||||||| ||||    
T  15726821 gacggattcagaattttttaatagtggg-gcaccatataaaaaaatttgtagcattaataattgtcctctataatttttcatattatggaaactttgaat 15726919  T
Q  104 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    | |||||| ||||| || |||||| ||||||| ||||| ||||||||||||||||||||    
T  15726920 ggttttcttattttgaaaatcaataaaaatatatttctttatataaataactaaacaat 15726978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 22399557 - 22399404
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||| ||||| || |||||||||| ||  ||| ||| ||||||||||||||  |||    
T  22399557 gacggatccaggatttttgaatagtgggcgcactatatataaaaatttgtagcattagtaattgtcctatagaattattcatattatggaaactttaaat 22399458  T
Q  104 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaa 158  Q
    ||||||||||||||||||||||||  ||| |  |||||| |||||||||||||||    
T  22399457 gattttctcattttcaatatcaatagaaaaacatttctc-atataaataactaaa 22399404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 15810665 - 15810823
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||| ||||||||| ||||||||  ||| ||| || |||||||| ||||| ||||||||||||| ||  ||||||| ||||| |||||||| |||     
T  15810665 gacggatctaggattttttaatagtggaggcatcatataaaaaaatttgtagcattaataattgtcctctacaatttttcatattacggaaactttgaac 15810764  T
Q  104 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    | |||||| ||||| || |||||| ||||||| ||||||||||||||||||||||||||    
T  15810765 ggttttcttattttgaaaatcaataaaaatatatttctctatataaataactaaacaat 15810823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 29368448 - 29368589
Alignment:
Q  13 caggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttct 111  Q
    |||||||||||| || |||| ||| ||| ||||||||||| ||||| ||||||||||||| ||  ||||||| |||||| ||||||| ||||| ||||||    
T  29368448 caggatttttgattattgggggcatcatatataaaaatttgtagcattaataattgtcctctagaatttttcatattattgaaactttgaatggttttct 29368547  T
Q  112 cattttcaatatcaatgaaaatatctttctctatataaataa 153  Q
    |||||||||||||||| ||| ||| ||||| |||||||||||    
T  29368548 cattttcaatatcaataaaagtatatttctttatataaataa 29368589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 17229054 - 17229004
Alignment:
Q  104 gattttctcattttcaatatcaatgaaaatatctttctctatataaataac 154  Q
    ||||||||||||||||| |||||| ||||||| ||||||||| ||||||||    
T  17229054 gattttctcattttcaaaatcaataaaaatatttttctctatgtaaataac 17229004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 4930660 - 4930704
Alignment:
Q  114 ttttcaatatcaatgaaaatatctttctctatataaataactaaa 158  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||    
T  4930660 ttttcaatatcaataaaaatatatttctttatataaataactaaa 4930704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 27343218 - 27343174
Alignment:
Q  93 aaacttagaatgattttctcattttcaatatcaatgaaaatatct 137  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||    
T  27343218 aaactttgaatgattttctcattttcaatgtcaataaaaatatct 27343174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 40909995 - 40910037
Alignment:
Q  85 tattatggaaacttagaatgattttctcattttcaatatcaat 127  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||    
T  40909995 tattatagaaactttgaatgatcttctcattttcaatatcaat 40910037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 5e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 47552200 - 47552043
Alignment:
Q  8 ggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgat 106  Q
    ||||||| ||||||||||||||||| |||| || ||||||||||| || || || ||||| ||||||| |||| ||| |||||||||||||| |||||||    
T  47552200 ggatccatgatttttgaatagtgggagcactatatataaaaatttgtaacattagtaattatcctttacgattattcatattatggaaactttgaatgat 47552101  T
Q  107 tttctcattttcaatatcaatgaaa--atatctttctctatataaataactaaacaat 162  Q
    ||||||||||||||||||||| |||  | |  ||||||| ||| ||||||||||||||    
T  47552100 tttctcattttcaatatcaataaaaagaaacttttctctgtatgaataactaaacaat 47552043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 22087913 - 22087819
Alignment:
Q  41 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatat 135  Q
    ||||||||||| || ||||||||||| |||| ||||||||||| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||    
T  22087913 tataaaaatttgtaacaataataattatcctctatgatttttcatattatgaaaactttgaatgattttcgcattttcaatatcaataaaaatat 22087819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 26333336 - 26333241
Alignment:
Q  9 gatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||| |||||||||||||| || |||| || ||||||||||| ||||| ||||||||||||| || |||| ||| |||||||||||||| ||||    
T  26333336 gatccaagatttttgaatagtcggggcactatatataaaaatttgtagcattaataattgtcctctacgattattcatattatggaaactttgaat 26333241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 46732653 - 46732714
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||| |||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||    
T  46732653 gaatgtttttctcattttcaatatcaat-aaaatatctctttctatataaataattaaacaat 46732714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 27907223 - 27907322
Alignment:
Q  61 ataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaaca 160  Q
    |||||||||||||| |||| | | |||| || |||  | |||||||||| |||||||||||| |||  ||||||||  ||||||||||| ||||||||||    
T  27907223 ataattgtcctttacgattctccatattttgaaaatattgaatgattttttcattttcaataccaacaaaaatatc--tctctatataagtaactaaaca 27907320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 13035532 - 13035574
Alignment:
Q  111 tcattttcaatatcaatgaaaatatctttctctatataaataa 153  Q
    |||||||| |||||||| ||||||| |||||||||||||||||    
T  13035532 tcattttcgatatcaataaaaatatttttctctatataaataa 13035574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 24368092 - 24368035
Alignment:
Q  101 aatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaa 158  Q
    ||||||||||||||||||||| ||||| ||||||||  |||| |||||| ||| ||||    
T  24368092 aatgattttctcattttcaatgtcaataaaaatatcactctcaatataagtaaataaa 24368035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 6495814 - 6495752
Alignment:
Q  102 atgattttctcattttcaatatcaatgaaaatatctttctc--tatataaataactaaacaat 162  Q
    |||||||||||||||| | | ||||| ||||||||| ||||  ||||||| ||||||||||||    
T  6495814 atgattttctcatttttagtctcaataaaaatatctctctctatatataagtaactaaacaat 6495752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 5e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 27850394 - 27850552
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||| |||||||||||| || | ||| ||| ||| ||||||| ||| | |||||||| |||| ||| ||||||| | |||||||||||| ||||    
T  27850394 gacggatccaagatttttgaataatgagggcatcatatatgaaaatttgtagtattaataattctcctctataatttttcattttatggaaactttgaat 27850493  T
Q  104 gattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||| || ||||||||||||| ||| ||||| |||||| |||||||||||||||||||||    
T  27850494 gatattatcattttcaatattaataaaaatgtctttcactatataaataactaaacaat 27850552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 30294091 - 30294204
Alignment:
Q  49 tttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatata 148  Q
    |||||| || ||||||||||| | ||  ||||||| |||||||||||||| ||||| |||||| ||||| || |||||| ||||||||||| | ||||||    
T  30294091 tttataacattaataattgtcttctacaatttttcatattatggaaactttgaatggttttcttattttgaaaatcaataaaaatatctttttttatata 30294190  T
Q  149 aataactaaacaat 162  Q
    ||||||||||||||    
T  30294191 aataactaaacaat 30294204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 46396719 - 46396620
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||| |||| || ||||||||||| ||||| ||||||||||||| || |||| ||| |||||| ||||||| ||||    
T  46396719 gacggatccaggatttttgaatagtgggggcactatatataaaaatttgtagcattaataattgtcctctacgattattcatattattgaaactttgaat 46396620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 1282175 - 1282277
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  1282175 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 1282274  T
Q  104 gat 106  Q
    |||    
T  1282275 gat 1282277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 1283206 - 1283308
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  1283206 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 1283305  T
Q  104 gat 106  Q
    |||    
T  1283306 gat 1283308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 37244915 - 37245005
Alignment:
Q  72 ttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    |||||||||||| | ||||| |||||| ||||||||||| ||||||| |||||||| |||||||  ||||| |||||||||| ||||||||    
T  37244915 ttatgatttttcattttatgaaaactttgaatgattttcacattttcgatatcaataaaaatattgttctcaatataaataattaaacaat 37245005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 29095902 - 29095842
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaaca 160  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||| ||| ||||||||||    
T  29095902 gaatgattttctcattttcaatctcaataaaaacatctttctctatgtaagtaactaaaca 29095842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 42772340 - 42772372
Alignment:
Q  130 aaatatctttctctatataaataactaaacaat 162  Q
    |||||||||||||||||||||||||||||||||    
T  42772340 aaatatctttctctatataaataactaaacaat 42772372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 2e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 40381594 - 40381703
Alignment:
Q  53 tagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaata 152  Q
    ||||| ||||||||||| | || |||||||  |||||| ||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  40381594 tagcattaataattgtcttctacgattttttatattatagaaactttgaaagattttctcattttcaatatcaataaaaatatatttctctatataaata 40381693  T
Q  153 actaaacaat 162  Q
    ||||||||||    
T  40381694 actaaacaat 40381703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 37728571 - 37728453
Alignment:
Q  41 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttc 140  Q
    ||||||||||| ||||| |||||||||| || ||||||||| | ||  ||||||| || |||| ||||||| ||||||||||||||| |||||||| |||    
T  37728571 tataaaaatttgtagcattaataattgttctctatgattttccgtaccatggaaaatttgaataattttctaattttcaatatcaataaaaatatcattc 37728472  T
Q  141 tctatataaataactaaac 159  Q
    |||||||||||||||||||    
T  37728471 tctatataaataactaaac 37728453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 42164204 - 42164059
Alignment:
Q  18 tttttgaatagtgggtgca-catttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattt 116  Q
    ||||||||||||||| | | ||| ||||||| ||| ||||| |||| ||| || | ||  ||||||  ||||||||||| || |||||||||||||||||    
T  42164204 tttttgaatagtgggggtatcatatataaaattttgtagcattaatgattatcatctacaattttttatattatggaaattttgaatgattttctcattt 42164105  T
Q  117 tcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    | ||||||||| |||||||| |||||||||||||||||||||||||    
T  42164104 ttaatatcaataaaaatatccttctctatataaataactaaacaat 42164059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 3310494 - 3310646
Alignment:
Q  9 gatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgatt 107  Q
    ||||||| |||||||||| ||||| |||| || ||| ||||||| ||||| ||||||||||||| ||  ||||||| |||||||||||||| |  | ||     
T  3310494 gatccagaatttttgaatggtgggggcactatatatgaaaatttgtagcattaataattgtcctctactatttttcatattatggaaactttg-gttatc 3310592  T
Q  108 ttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaa 161  Q
    || ||||||||||||||| | ||||||| |||| ||||| |||||| |||||||    
T  3310593 ttatcattttcaatatcattaaaaatatatttcactatacaaataattaaacaa 3310646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 1336109 - 1336201
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaac 96  Q
    |||||||||||||||||||||||||||| |||| |  ||||||||||| ||||| || |||||||||| ||||||| ||| ||||||||||||    
T  1336109 gacggatccaggatttttgaatagtgggggcactacatataaaaatttgtagcattagtaattgtcctctatgattattcatattatggaaac 1336201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 9e-16
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 2537200 - 2537262
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||||||||||||||||| |||  ||||||||| ||||||||||| ||||||||||||    
T  2537200 gaatgattttctcattttcaataccaacaaaaatatctctctctatataagtaactaaacaat 2537262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 12585655 - 12585754
Alignment:
Q  63 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| ||||||||||| |||||| |||||    
T  12585655 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctatataagtaactagacaat 12585754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 16340159 - 16340314
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcacatttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatg 104  Q
    |||||||||| |||||||||| | |||  ||||  | | ||||| || ||||| ||||||| ||| | ||  ||| ||| ||||| |||||||  |||||    
T  16340159 gacggatccaagatttttgaacaatggaggcactataaaaaaaaattgtagcattaataatagtcttctacaattattcatattacggaaactgtgaatg 16340258  T
Q  105 attttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||| ||||||||||||||| |||| |  | ||||| ||||||||||||||||||    
T  16340259 attttcttattttcaatatcaataaaaaaa--tatctctgtataaataactaaacaat 16340314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 23756791 - 23756643
Alignment:
Q  14 aggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttat-gatttttcctattatggaaacttagaatgattttct 111  Q
    ||||| ||||||||||||| |||| || |||||||| || ||||| |||||||||||  | || |||||||  |||||||||||||| ||||||||||||    
T  23756791 aggatatttgaatagtgggggcaccatatataaaaagttgtagcattaataattgtctctaattgattttttatattatggaaactttgaatgattttct 23756692  T
Q  112 cattttc-aatatcaatgaaaatatctttctctatataaataactaaac 159  Q
    ||||||| ||||||||| ||||||| ||| |||||||||| ||||||||    
T  23756691 cattttcaaatatcaataaaaatatatttttctatataaacaactaaac 23756643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 162
Target Start/End: Complemental strand, 22973002 - 22972903
Alignment:
Q  63 aattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||| || || || || |||| ||||||  | |||||||||||||||||||||| ||||| ||||| ||| ||| ||||||| |||||| |||||    
T  22973002 aattgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctatatataagtaactagacaat 22972903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 33338348 - 33338293
Alignment:
Q  105 attttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||||||||||||||||||| ||||||  ||  ||||||||||||| ||||||||    
T  33338348 attttctcattttcaatatcaataaaaata--ttattctatataaataattaaacaat 33338293  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 33758512 - 33758450
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    |||| ||||||||||||||||| ||||| |||||||| ||||| |||||| |||  |||||||    
T  33758512 gaataattttctcattttcaatgtcaataaaaatatcattctcaatataagtaatcaaacaat 33758450  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 28529223 - 28529102
Alignment:
Q  41 tataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttc 140  Q
    ||||||||| | ||||| |||||||||| || |  |||||||| |||||| |||||||  || |||||| ||||||||||||||||| ||||||| ||||    
T  28529223 tataaaaatctgtagcattaataattgttctctccgatttttcatattatagaaactttaaaagattttatcattttcaatatcaataaaaatatttttc 28529124  T
Q  141 tctatataaataactaaacaat 162  Q
    ||| ||||||||||||||||||    
T  28529123 tctgtataaataactaaacaat 28529102  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 42071417 - 42071489
Alignment:
Q  85 tattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaa 157  Q
    |||||| |||||||  ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  42071417 tattatcgaaactttaaatgattttctcattttcaatatcaataaaaatatatttatctatataaataactaa 42071489  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 44718840 - 44718917
Alignment:
Q  85 tattatggaaacttagaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    ||||||| ||||||  ||||||||||| ||||||||||||| |  || ||||||||||||||||||||||||||||||    
T  44718840 tattatgaaaactttcaatgattttcttattttcaatatcagtagaagtatctttctctatataaataactaaacaat 44718917  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 21490384 - 21490307
Alignment:
Q  58 ataataattgtcctttatgatttttcctattatggaaacttagaatgattttctcattttcaatatcaatgaaaatat 135  Q
    ||||||| |||  |||| |||||||| |||| | ||||| | |||||||||||||| ||||||||||||| |||||||    
T  21490384 ataataagtgttgtttacgatttttcatattcttgaaacattgaatgattttctcaatttcaatatcaataaaaatat 21490307  T

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Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 7813624 - 7813564
Alignment:
Q  100 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaat 162  Q
    |||||||||||||||||| |||| |||  || ||||||  |||||||||| ||||||||||||    
T  7813624 gaatgattttctcattttaaataccaacaaatatatct--ctctatataagtaactaaacaat 7813564  T

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Target: scaffold0245 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 7855 - 7957
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  7855 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 7954  T
Q  104 gat 106  Q
    |||    
T  7955 gat 7957  T

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Target: scaffold0229 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 8183 - 8285
Alignment:
Q  5 gacggatccaggatttttgaatagtgggtgcac-atttataaaaatttatagcaataataattgtcctttatgatttttcctattatggaaacttagaat 103  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| | ||||| ||||||||||| | ||  ||| ||| |||||||||||||| ||||    
T  8183 gacggatccaggatttttgaatagtgggggcactatatataaaaatctgtagcattaataattgtcatctacaattattcatattatggaaactttgaat 8282  T
Q  104 gat 106  Q
    |||    
T  8283 gat 8285  T

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