View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5830-4 (Length: 155)

Name: Solexa-NF5830-4
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5830-4
Solexa-NF5830-4
[»] chr3 (17 HSPs)
chr3 (28-155)||(6850408-6850535)
chr3 (28-155)||(7748776-7748903)
chr3 (30-154)||(6915877-6916001)
chr3 (28-136)||(6898862-6898970)
chr3 (30-155)||(6881292-6881417)
chr3 (28-154)||(6141060-6141186)
chr3 (28-145)||(13271691-13271808)
chr3 (33-145)||(6244072-6244184)
chr3 (28-136)||(6723226-6723334)
chr3 (28-130)||(6167665-6167767)
chr3 (41-130)||(6257989-6258078)
chr3 (48-119)||(6592517-6592588)
chr3 (28-129)||(6236499-6236600)
chr3 (35-135)||(6264466-6264566)
chr3 (50-131)||(8570110-8570191)
chr3 (33-133)||(5266837-5266937)
chr3 (83-133)||(8588563-8588613)
[»] chr1 (1 HSPs)
chr1 (28-120)||(35141532-35141624)


Alignment Details
Target: chr3 (Bit Score: 112; Significance: 6e-57; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 6850535 - 6850408
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6850535 tgggtaaatgataatccccgagccaatatgggaagctactgcctcggtagtctttgatggttagcctcatgaggtttccatttggttgaagagcttccaa 6850436  T
Q  128 gacagagacttgtgcttccattactgat 155  Q
    ||||||||||| | ||||||||||||||    
T  6850435 gacagagacttttacttccattactgat 6850408  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 7748776 - 7748903
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||    
T  7748776 tgggtaaatgataatcgccaagccaatttggaaagctactgcctctgtagtctttgatggttagcctcatgaggtttctatttggttggagagcctctaa 7748875  T
Q  128 gacagagacttgtgcttccattactgat 155  Q
    ||||||||| ||||||||  ||||||||    
T  7748876 gacagagacatgtgcttcagttactgat 7748903  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 6915877 - 6916001
Alignment:
Q  30 ggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaaga 129  Q
    |||||||||||||| || |||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  6915877 ggtaaatgataatctccaagccaatatggaaagctactgcctccatagtctttgatggtgagcctcatgagatttctatttggttgaagagcctccaaga 6915976  T
Q  130 cagagacttgtgcttccattactga 154  Q
     ||||| |||||||||  |||||||    
T  6915977 tagagatttgtgcttcagttactga 6916001  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 6898862 - 6898970
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||||||||| | |||| ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||    
T  6898862 tgggtaaatgatgaaccccaagccaatttggaaatctactgcctctgtagtctttgatggttagcctcatgaggtttatatttggttgaagagcctctaa 6898961  T
Q  128 gacagagac 136  Q
    |||||||||    
T  6898962 gacagagac 6898970  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 6881292 - 6881417
Alignment:
Q  30 ggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaaga 129  Q
    |||||||||  |||||| ||||| | ||||||||||| ||||| |||||||||||||||||| ||| |||||||| |||||||||||||||| |||||||    
T  6881292 ggtaaatgacgatccccaagccagtttggaaagctaccgcctctgtagtctttgatggttagactcgtgaggtttatatttggttgaagagcctccaaga 6881391  T
Q  130 cagagacttgtgcttccattactgat 155  Q
    ||||| ||||||||||  ||||||||    
T  6881392 cagaggcttgtgcttcagttactgat 6881417  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 6141060 - 6141186
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||| ||||| |||||| |||||||  ||||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  6141060 tgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaa 6141159  T
Q  128 gacagagacttgtgcttccattactga 154  Q
    ||| |||||  |||||||  |||||||    
T  6141160 gaccgagacacgtgcttctgttactga 6141186  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 13271808 - 13271691
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||| ||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| || |||||||||| ||||||||||||||||||||||||    
T  13271808 tgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagtctcatgaggtgtctatttggttgaagagcttccaa 13271709  T
Q  128 gacagagacttgtgcttc 145  Q
    ||| |||||  |||||||    
T  13271708 gaccgagacacgtgcttc 13271691  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 6244072 - 6244184
Alignment:
Q  33 aaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagacag 132  Q
    ||||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| ||||||| |||||| ||||||||||||||||| ||||||| ||    
T  6244072 aaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatag 6244171  T
Q  133 agacttgtgcttc 145  Q
    |||| ||||||||    
T  6244172 agacatgtgcttc 6244184  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 6723334 - 6723226
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||||||||  || ||| | ||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  6723334 tgggtaaatgacgatacccaacccaatttggaaagctactgcctccatagtctttgatggtgagcctcatgaggtttttatttggttgaagagcctccaa 6723235  T
Q  128 gacagagac 136  Q
    |||||||||    
T  6723234 gacagagac 6723226  T

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Target: chr3; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 6167665 - 6167767
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||| ||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  6167665 tgggtagatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgagatttctatttggttgaagagcctccaa 6167764  T
Q  128 gac 130  Q
    |||    
T  6167765 gac 6167767  T

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Target: chr3; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 6257989 - 6258078
Alignment:
Q  41 atccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagac 130  Q
    |||||| ||||||| |||||||||||| |||| |||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  6257989 atccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctattaggttgaagagcctccaagac 6258078  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 6592588 - 6592517
Alignment:
Q  48 agccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaaga 119  Q
    ||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6592588 agccaatttggaaagcttctgcctctgtagtctttgatggtgagcctcatgaggtttctatttggttgaaga 6592517  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 6236499 - 6236600
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaa 127  Q
    |||||| ||||| |||||| |||||||  ||||||||||| |||| |||||| ||||||   ||||||||||| |||||||||||| ||||||| |||||    
T  6236499 tgggtagatgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgccgagcctcatgagatttctatttggtcgaagagcctccaa 6236598  T
Q  128 ga 129  Q
    ||    
T  6236599 ga 6236600  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 6264466 - 6264566
Alignment:
Q  35 atgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagacagag 134  Q
    ||||| |||||| |||||||  ||||||||||| |||| |||||| |||||| | |||||| |||| |||||||||||| | ||||| |||||||| |||    
T  6264466 atgatgatccccaagccaattaggaaagctactacctctgtagtcattgatgctgagcctcgtgagatttctatttggtcgcagagcctccaagaccgag 6264565  T
Q  135 a 135  Q
    |    
T  6264566 a 6264566  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 8570191 - 8570110
Alignment:
Q  50 ccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagaca 131  Q
    ||||| |||||||||||||||   ||||| | ||||||| |||||| | | ||| ||||||||||||||||| |||||||||    
T  8570191 ccaatttggaaagctactgccattgtagtatgtgatggtgagcctcttcaagttgctatttggttgaagagcatccaagaca 8570110  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 5266837 - 5266937
Alignment:
Q  33 aaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagagcttccaagacag 132  Q
    |||||| || |||| ||||||| |||||| ||| ||||| ||||||  | |||||| ||| |  | ||||| ||||||||||||||||| ||||||||||    
T  5266837 aaatgacaacccccaagccaatttggaaaactagtgcctgggtagtgctcgatggtcagcttattaaggttgctatttggttgaagagcctccaagacag 5266936  T
Q  133 a 133  Q
    |    
T  5266937 a 5266937  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 8588563 - 8588613
Alignment:
Q  83 gatggttagcctcatgaggtttctatttggttgaagagcttccaagacaga 133  Q
    |||||| |||||| | | ||||||||||||||||||||| |||||||||||    
T  8588563 gatggtaagcctcttcaagtttctatttggttgaagagcctccaagacaga 8588613  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 35141624 - 35141532
Alignment:
Q  28 tgggtaaatgataatccccgagccaatatggaaagctactgcctcggtagtctttgatggttagcctcatgaggtttctatttggttgaagag 120  Q
    |||||||||||| |||||| ||||||| |||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||| |||||||    
T  35141624 tgggtaaatgatgatccccaagccaatttggaaagctactacctctgtagtcattgatggtgagcctcatgaggtttctatttggctgaagag 35141532  T

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