View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5830-6 (Length: 151)
Name: Solexa-NF5830-6
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5830-6 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 4473978 - 4474102
Alignment:
| Q |
19 |
agagataccaaaaaccttaataccgcgactcaaattgcaattgcaagccttttttaaaagtcatgtactattgtaactatgatctatttatctatctagc |
118 |
Q |
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| T |
4473978 |
agagataccaaaaaccttaatatcgcgactcaaattgcaattgcaaacctttcttaaaagtcatgtactattgtaactatgatctatttatctatctagc |
4474077 |
T |
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| Q |
119 |
atataaaattactaaaaccatatct |
143 |
Q |
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| T |
4474078 |
atataaaattactaaaaccatatct |
4474102 |
T |
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