View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5830-9 (Length: 130)

Name: Solexa-NF5830-9
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5830-9
Solexa-NF5830-9
[»] chr6 (2 HSPs)
chr6 (6-129)||(11320822-11320942)
chr6 (61-92)||(11302282-11302313)
[»] chr4 (1 HSPs)
chr4 (22-123)||(24857849-24857949)
[»] chr7 (3 HSPs)
chr7 (24-123)||(19203699-19203797)
chr7 (6-117)||(42937552-42937662)
chr7 (25-88)||(20125314-20125377)
[»] chr1 (2 HSPs)
chr1 (22-129)||(3850401-3850507)
chr1 (24-88)||(15552966-15553030)
[»] chr5 (1 HSPs)
chr5 (22-118)||(18079961-18080056)
[»] chr2 (1 HSPs)
chr2 (21-92)||(7384807-7384878)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 6e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 6e-44
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 11320942 - 11320822
Alignment:
Q  6 ataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaata 105  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||    
T  11320942 ataaaggaagaacaccagagtatattatactactttaaaagtatatctttaaattgcaatataagtcctatttataggatac---tgaggtaaatgaata 11320846  T
Q  106 atcacgttacaatgcactcactag 129  Q
    ||||||||||||||||||||||||    
T  11320845 atcacgttacaatgcactcactag 11320822  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 92
Target Start/End: Complemental strand, 11302313 - 11302282
Alignment:
Q  61 gtaatataagtcctatttataggatacaaaag 92  Q
    ||||| ||||||||||||||||||||||||||    
T  11302313 gtaatgtaagtcctatttataggatacaaaag 11302282  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 24857849 - 24857949
Alignment:
Q  22 agagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgca 121  Q
    |||||||||| || ||||||  |||| || ||||| |||| | ||||| |||||||||||||| || ||| |||||||||||||| ||| ||||||| ||    
T  24857849 agagtatattgtattacttcttaagtgtaactttacattgcattataaatcctatttataggacac-aaataggtaaatgaataagcacattacaatcca 24857947  T
Q  122 ct 123  Q
    ||    
T  24857948 ct 24857949  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 19203699 - 19203797
Alignment:
Q  24 agtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgcact 123  Q
    |||||||| || | ||||| |||| | |||||| |||||||||||  |||| ||||| ||| |||||  |||||||||||||||||| ||||||| ||||    
T  19203699 agtatattgtatttcttcacaagtgtgtctttatattgtaatatagatcctgtttattggacacaaat-aggtaaatgaataatcacattacaatccact 19203797  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 42937662 - 42937552
Alignment:
Q  6 ataagggaagaacacaagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaata 105  Q
    |||| |||||||||  |||||||||| || |||||||||||| | || ||| |||||||| |  ||||||||||||||| || | | ||||| ||||||     
T  42937662 ataaaggaagaacaagagagtatattgtattacttcaaaagtgtgtcattacattgtaatgttggtcctatttataggacac-atataggtacatgaatg 42937564  T
Q  106 atcacgttacaa 117  Q
    ||||| ||||||    
T  42937563 atcacattacaa 42937552  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 20125377 - 20125314
Alignment:
Q  25 gtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggataca 88  Q
    ||||||| || ||||||| |||| | || ||| |||| |||||| |||||||||||||||||||    
T  20125377 gtatattgtattacttcacaagtgtgtcattacattgcaatatatgtcctatttataggataca 20125314  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 3850401 - 3850507
Alignment:
Q  22 agagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaatgca 121  Q
    ||||||||||  | ||||||| |||| | |||||| |||| ||||||  | |||||||||||| || ||| |||||||||||||||||| || |||| ||    
T  3850401 agagtatattgcattacttcataagtgtgtctttatattgcaatatagattctatttataggacac-aaataggtaaatgaataatcacatttcaatcca 3850499  T
Q  122 ctcactag 129  Q
    || |||||    
T  3850500 cttactag 3850507  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 15553030 - 15552966
Alignment:
Q  24 agtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggataca 88  Q
    |||||||| || ||||||| |||| | || ||| |||| |||||| |||||||||||||||||||    
T  15553030 agtatattgtattacttcacaagtgtgtcattacattgcaatataggtcctatttataggataca 15552966  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 18079961 - 18080056
Alignment:
Q  22 agagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaagaggtaaatgaataatcacgttacaat 118  Q
    |||||||||| || ||||||| |||| | || ||| |||||||| || ||||||||||||||| || | | ||||| |||||| ||||| |||||||    
T  18079961 agagtatattgtattacttcacaagtgtgtcattacattgtaatgtaggtcctatttataggacac-atataggtacatgaatgatcacattacaat 18080056  T

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Target: chr2 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 7384807 - 7384878
Alignment:
Q  21 aagagtatattatactacttcaaaagtatatctttaaattgtaatataagtcctatttataggatacaaaag 92  Q
    ||||||||||| || | ||||  |||||| |||||| || ||||| || ||||||||||||| |||||||||    
T  7384807 aagagtatattgtattgcttctcaagtatgtctttatatggtaatgtaggtcctatttatagaatacaaaag 7384878  T

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