View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-13 (Length: 143)
Name: Solexa-NF5831-13
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-13 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 3e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 41546219 - 41546358
Alignment:
| Q |
4 |
aaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtg |
103 |
Q |
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| T |
41546219 |
aaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtg |
41546318 |
T |
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| Q |
104 |
actatgttgctatctttgatgctgattttcaacctgagtc |
143 |
Q |
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| T |
41546319 |
actatgttgccatctttgatgctgattttcaacctgagtc |
41546358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 26832775 - 26832654
Alignment:
| Q |
16 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
115 |
Q |
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| T |
26832775 |
ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta |
26832676 |
T |
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| Q |
116 |
tctttgatgctgattttcaacc |
137 |
Q |
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| T |
26832675 |
tctttgatgctgattttcaacc |
26832654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 26786060 - 26785933
Alignment:
| Q |
13 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
112 |
Q |
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| T |
26786060 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
26785961 |
T |
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| Q |
113 |
ctatctttgatgctgattttcaacctga |
140 |
Q |
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| T |
26785960 |
ccatctttgatgctgattttcaacctga |
26785933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 26791800 - 26791673
Alignment:
| Q |
13 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
112 |
Q |
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| T |
26791800 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
26791701 |
T |
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| Q |
113 |
ctatctttgatgctgattttcaacctga |
140 |
Q |
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| T |
26791700 |
ccatctttgatgctgattttcaacctga |
26791673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 26822701 - 26822574
Alignment:
| Q |
13 |
aacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttg |
112 |
Q |
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| T |
26822701 |
aacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttg |
26822602 |
T |
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| Q |
113 |
ctatctttgatgctgattttcaacctga |
140 |
Q |
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| T |
26822601 |
ccatctttgatgctgattttcaacctga |
26822574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 41917455 - 41917576
Alignment:
| Q |
16 |
ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta |
115 |
Q |
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| T |
41917455 |
ataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttgcaa |
41917554 |
T |
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| Q |
116 |
tctttgatgctgattttcaacc |
137 |
Q |
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| T |
41917555 |
tatttgatgctgattttcaacc |
41917576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 20239218 - 20239135
Alignment:
| Q |
49 |
tacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgctatctttgatgctgatttt |
132 |
Q |
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| T |
20239218 |
tacaaagcaggtgcattgaaagaaggactaaaacgtagctatgtcaagcattgtgaatatgttgtcatatttgatgctgatttt |
20239135 |
T |
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