View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-14 (Length: 142)
Name: Solexa-NF5831-14
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-14 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 33731281 - 33731422
Alignment:
| Q |
1 |
agaagaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtacta |
100 |
Q |
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| T |
33731281 |
agaagaagaacttgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtacta |
33731380 |
T |
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| Q |
101 |
cttagtcctgcttctacatcaacatcttcatccatgatgaaa |
142 |
Q |
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| T |
33731381 |
cttagtcctgcttctacatcaacatcttcatccatgatgaaa |
33731422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 33802660 - 33802801
Alignment:
| Q |
1 |
agaagaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtacta |
100 |
Q |
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| T |
33802660 |
agaagaagaacatgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtacta |
33802759 |
T |
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| Q |
101 |
cttagtcctgcttctacatcaacatcttcatccatgatgaaa |
142 |
Q |
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| T |
33802760 |
cttagtcctgcttctacatcaacatcttcatccatgatgaaa |
33802801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34283452 - 34283397
Alignment:
| Q |
1 |
agaagaagaacttgttgtttctcttgttgctgcagagggatatagaaatgatgcag |
56 |
Q |
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| T |
34283452 |
agaagaagaacttgctgctcctcttattgctgcagagggatatagaaatgatgcag |
34283397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 6126368 - 6126302
Alignment:
| Q |
65 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcat |
131 |
Q |
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| T |
6126368 |
ggagggctattaatttcgaactgagtagtagcactacttggtcctgcatctatatcagcatcttcat |
6126302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 10343368 - 10343426
Alignment:
| Q |
73 |
attaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcat |
131 |
Q |
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| T |
10343368 |
attaatttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcat |
10343426 |
T |
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