View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-16 (Length: 141)
Name: Solexa-NF5831-16
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 6640751 - 6640621
Alignment:
| Q |
2 |
atgaaggatgagatggatcttaacagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaactgctgaaacacgactcctcttctga |
101 |
Q |
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| T |
6640751 |
atgaaggatgagatggatcttaacagaggtagatgtgactgacattgtgaaaaagactccataaattgctg---------aaacacgactcctcttctga |
6640661 |
T |
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| Q |
102 |
tgcatgaaaaagctcctcatgacggcatcatcaagcatgt |
141 |
Q |
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| T |
6640660 |
tgcatgaaaaagctcctcatgacggcatcatcaagcatgt |
6640621 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 8730411 - 8730453
Alignment:
| Q |
27 |
gaggtagatgtgactgacattgtgaaaaagactccataaattg |
69 |
Q |
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| T |
8730411 |
gaggtagatgtgaatgacctggtgaaaaagactccataaattg |
8730453 |
T |
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