View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-17 (Length: 140)
Name: Solexa-NF5831-17
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-17 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 3e-52
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 35020136 - 35020013
Alignment:
| Q |
16 |
atacgagcgtatgaggatgaattcaggatgaaatcacgaccaatgaattgttggtagggcacaaagaaaatcgcagataatgattcgatcttactgaatg |
115 |
Q |
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| T |
35020136 |
atacgagcgtatgaggatgaattcaggataaaatcgcgaccattgaattgttggtagtgcacaaagaaaatcgcagataatgattcgatcttactgaatg |
35020037 |
T |
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| Q |
116 |
aaattacaatgagaaatcatacat |
139 |
Q |
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| T |
35020036 |
aaattacaatgaggaatcatacat |
35020013 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 55667278 - 55667319
Alignment:
| Q |
22 |
gcgtatgaggatgaattcaggatgaaatcacgaccaatgaat |
63 |
Q |
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| T |
55667278 |
gcgtatgaggatgaattcagtatgaaatcacgatcaatgaat |
55667319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 27447821 - 27447898
Alignment:
| Q |
24 |
gtatgaggatgaattcaggatgaaatcacgaccaatgaattgttggtagggcacaaagaaaatcgcagataatgattc |
101 |
Q |
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| T |
27447821 |
gtatgagaataaattcaggatgaaattgcgaccaatgaattgttggtactgcgcaaacaaaattgcagacaattattc |
27447898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 46790401 - 46790357
Alignment:
| Q |
23 |
cgtatgaggatgaattcaggatgaaatcacgaccaatgaattgtt |
67 |
Q |
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| T |
46790401 |
cgtatgaggatacattcaagatgaaatcgcgaccaatgaattgtt |
46790357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 31700965 - 31701010
Alignment:
| Q |
27 |
tgaggatgaattcaggatgaaatcacgaccaatgaattgttggtag |
72 |
Q |
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| T |
31700965 |
tgaggatgaattcaggatgaaatcgcaaccattgaatcgttggtag |
31701010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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