View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5831-2 (Length: 202)
Name: Solexa-NF5831-2
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 4e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-92
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 12745079 - 12744878
Alignment:
| Q |
1 |
tcattcacctatcctttcttgcaagttgtcaactattggctgagttgatacttcatatggattttatcagcagcattcaattggttagagcgatctagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12745079 |
tcattcacctatcctttcttgcaaattgtcaactattggctgagttgatacttcatatggattttatcagcagcattcaattggttagagcgatctagtt |
12744980 |
T |
|
| Q |
101 |
gtaaakagagawgaaaatagattgattctgaaaggtaagatactacatccatatatcttggcctattatagtacatccttctctaaacataaaattcaat |
200 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
12744979 |
gtaaatagagatgagaatagattgattctgaaaggtaacatactacatccatatatattggcctattctagtacattcctctctaaacataaaattcaat |
12744880 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
12744879 |
tt |
12744878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-92
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 12756069 - 12755868
Alignment:
| Q |
1 |
tcattcacctatcctttcttgcaagttgtcaactattggctgagttgatacttcatatggattttatcagcagcattcaattggttagagcgatctagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12756069 |
tcattcacctatcctttcttgcaaattgtcaactattggctgagttgatacttcatatggattttatcagcagcattcaattggttagagcgatctagtt |
12755970 |
T |
|
| Q |
101 |
gtaaakagagawgaaaatagattgattctgaaaggtaagatactacatccatatatcttggcctattatagtacatccttctctaaacataaaattcaat |
200 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
12755969 |
gtaaatagagatgagaatagattgattctgaaaggtaacatactacatccatatatattggcctattctagtacattcctctctaaacataaaattcaat |
12755870 |
T |
|
| Q |
201 |
tt |
202 |
Q |
| |
|
|| |
|
|
| T |
12755869 |
tt |
12755868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University