View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-23 (Length: 134)
Name: Solexa-NF5831-23
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-23 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 6e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 4138041 - 4137915
Alignment:
| Q |
8 |
aataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgactattactttattg |
107 |
Q |
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| T |
4138041 |
aataacacaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgactattactttattg |
4137942 |
T |
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| Q |
108 |
gaaaatatgtatctgataaggaagagt |
134 |
Q |
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| T |
4137941 |
gaaaatatgtatctgataaggaagagt |
4137915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 4129319 - 4129210
Alignment:
| Q |
14 |
acaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgactattactttattggaaaat |
113 |
Q |
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| T |
4129319 |
acaaatggggtggatacaactatggaaaattcaagtgttagacatgtctt-aaaataagctatttccgtagacatcttgacttctactttattggaaact |
4129221 |
T |
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| Q |
114 |
atgtatctgat |
124 |
Q |
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| T |
4129220 |
atgtatctgat |
4129210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 4142772 - 4142665
Alignment:
| Q |
17 |
aatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgactattactttattggaaaatatg |
116 |
Q |
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| T |
4142772 |
aatggggtggatacatctgtggaaaattcaagtgttagacatgtctttaagataagttatctactaagatgtcatgattactacttcattgggaaatatg |
4142673 |
T |
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| Q |
117 |
tatctgat |
124 |
Q |
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| T |
4142672 |
tatctgat |
4142665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 4118127 - 4118011
Alignment:
| Q |
14 |
acaaatggagttgatacaactatggaaaattcaagtgttagacatgtcttgaagataagctatctacgtagacgtcatgactattactttattggaaaat |
113 |
Q |
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|||||||| || |||||| || |||| |||||||||||||| ||||| |||||||||||||||||| | | || |||||||| || ||| |||| |||| |
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| T |
4118127 |
acaaatggggtggatacatctgtggataattcaagtgttaggcatgttttgaagataagctatctaagaaaacagcatgactactattttcttggtaaat |
4118028 |
T |
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| Q |
114 |
atgtatctgataaggaa |
130 |
Q |
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| T |
4118027 |
atgtttctgataaggaa |
4118011 |
T |
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