View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-3 (Length: 196)
Name: Solexa-NF5831-3
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-3 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 8e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 41490234 - 41490412
Alignment:
| Q |
15 |
aggtgtttgtgctttagtgtctaaatttgttgaattttctgaaagatagaaaattttaatttgataacttgtattgtattataagcaggtgatccaaaag |
114 |
Q |
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| T |
41490234 |
aggtgtttgtgctttagtgtctaaatttgttgaattttctgaaagatagaaaattttaatttgataacttgtattgtattataagcaggtgatccaaaag |
41490333 |
T |
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| Q |
115 |
agagctattacattggccctttaacagataccacaagtgttcgtctgaatcaatggccttctaatggtatgaatttcct |
193 |
Q |
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| T |
41490334 |
agagctattacattggccctttaacagataccacaagtgttcgtctgaatcaatggccttctaatggtatgaatttcct |
41490412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 41482650 - 41482752
Alignment:
| Q |
91 |
tattataagcaggtgatccaaaagagagctattacattggccctttaacagataccacaagtgttcgtctgaatcaatggccttctaatggtatgaattt |
190 |
Q |
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| T |
41482650 |
tattacaagcaggtgatccaaaagagagctattacattggctctttggaagataccactagtgttcgtttgaatcaatggccttctgatagtatgaattt |
41482749 |
T |
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| Q |
191 |
cct |
193 |
Q |
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| T |
41482750 |
cct |
41482752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 41496707 - 41496799
Alignment:
| Q |
96 |
taagcaggtgatccaaaagagagcta----ttacattggccctttaacagataccacaagtgttcgtctgaatcaatggccttctaatggtat |
184 |
Q |
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| T |
41496707 |
taagcagatgatccaaaagagagctactaggtacattggtcctttaacagataaaactagtgttcgtctgaatcaatggccttgtgatggtat |
41496799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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