View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-34 (Length: 127)
Name: Solexa-NF5831-34
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-34 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-56
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 4228744 - 4228625
Alignment:
| Q |
8 |
ataagttcaaaacttcaaataagccaatccaaacagctcctcgttgttctctctagtactatactaatataagctatttctgkcctctatttgctttgat |
107 |
Q |
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| T |
4228744 |
ataagttcaaaacttcaaataagccaatccaaacagctcctcgttgttctctctagtactatactaatataagctatttctggcctctatttgctttgat |
4228645 |
T |
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| Q |
108 |
tctataattctattttctga |
127 |
Q |
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|||| |||| |||||||||| |
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| T |
4228644 |
tctaaaattgtattttctga |
4228625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-45
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 52619138 - 52619254
Alignment:
| Q |
8 |
ataagttcaaaacttcaaataagccaatccaaacagctcctcgttgttctctctagtactatactaatataagctatttctgkcctctatttgctttgat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
52619138 |
ataagttcaaaacttcaaataagccaatccaaacagctcctcgttgttctctctagtacta---taatataagctatttctggcctctatttgctttgat |
52619234 |
T |
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| Q |
108 |
tctataattctattttctga |
127 |
Q |
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|||| |||| |||| ||||| |
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| T |
52619235 |
tctaaaattgtattatctga |
52619254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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