View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-36 (Length: 124)
Name: Solexa-NF5831-36
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-36 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-52
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 27561181 - 27561297
Alignment:
| Q |
8 |
agcatagccgcacaaagttctgcgtagttctactttgtccactcttacaaaacarttattgtgcctgtgccagcccctatggtgcaaaatcttcatcacc |
107 |
Q |
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| T |
27561181 |
agcatagctgcacaaagttctgcgtagttctactttgtccacacttacaaaacaattattgtgcctgtgccagcccctatggtgaaaaatcttcatcacc |
27561280 |
T |
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| Q |
108 |
agcaaagctgcacaaag |
124 |
Q |
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| T |
27561281 |
agcaaagctgcacaaag |
27561297 |
T |
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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 27561145 - 27561197
Alignment:
| Q |
72 |
ctgtgccagcccctatggtgcaaaatcttcatcaccagcaaagctgcacaaag |
124 |
Q |
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| T |
27561145 |
ctgtgccagcccctatggtgaaaaatcttcaccaccagcatagctgcacaaag |
27561197 |
T |
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