View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-38 (Length: 120)
Name: Solexa-NF5831-38
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-38 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 21372940 - 21373044
Alignment:
| Q |
16 |
acagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttccgagagaggtaagcgtgtggcttctgcagcaacaccaccaaatacaact |
115 |
Q |
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| T |
21372940 |
acagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggaaagcgtgtggcttctgcagcaacaccaccaaatacaact |
21373039 |
T |
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| Q |
116 |
cctac |
120 |
Q |
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||||| |
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| T |
21373040 |
cctac |
21373044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 21384617 - 21384513
Alignment:
| Q |
16 |
acagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttccgagagaggtaagcgtgtggcttctgcagcaacaccaccaaatacaact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21384617 |
acagaaaggtttgcatcaaccaagtcttaggtttgctgagaatagtcgttctgagagaggaaagcgtgtggcttctgcagcaacaccaccaaatacaact |
21384518 |
T |
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| Q |
116 |
cctac |
120 |
Q |
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||||| |
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| T |
21384517 |
cctac |
21384513 |
T |
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