View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-4 (Length: 171)
Name: Solexa-NF5831-4
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-4 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 9e-81; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 9e-81
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 33803019 - 33802856
Alignment:
| Q |
8 |
actactactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatc |
107 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33803019 |
actactactggtgctaggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggtgaaacttctaatc |
33802920 |
T |
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| Q |
108 |
aaggttcacaaattggtgaaaggtttagcagaagacgcactcttcctcctccttttcatcctta |
171 |
Q |
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| T |
33802919 |
aaggttcacaaattgatgaaaggtttagcagaagacgcactcttcctcctccttttcatcctta |
33802856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 33731640 - 33731477
Alignment:
| Q |
8 |
actactactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatc |
107 |
Q |
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| T |
33731640 |
actactactggtgctaggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcgcctgatccattcactagaggggaaacttctaatc |
33731541 |
T |
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| Q |
108 |
aaggttcacaaattggtgaaaggtttagcagaagacgcactcttcctcctccttttcatcctta |
171 |
Q |
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| T |
33731540 |
aaggttcacaaattgatgaaaggtttagcagaagacacactcttcctcctccttttcatcctta |
33731477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 6145495 - 6145654
Alignment:
| Q |
8 |
actactactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatc |
107 |
Q |
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| T |
6145495 |
actactattggtactaggaatgatgagttgtttcgtgctaattcattgttcaagaggaggagatcacctgatccattcactagaggtgaaacttctaatc |
6145594 |
T |
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| Q |
108 |
aaggttcacaaattggtgaaaggtttagcagaagacgcactcttcctcctccttttcatc |
167 |
Q |
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| T |
6145595 |
aaggttcacaagttgacgaaagctcaagcagaagacacacttttcctcctccttttcatc |
6145654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 6126078 - 6126234
Alignment:
| Q |
10 |
tactactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaa |
109 |
Q |
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| T |
6126078 |
tactattggtactaggaatgatgagttgtttcgtgctaattcattgttaaagagaaatagatcacccgatccattcattagaggtgaaacttctaatcaa |
6126177 |
T |
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| Q |
110 |
ggttcacaaattggtgaaaggtttagcagaagacgcactcttcctcctccttttcat |
166 |
Q |
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| T |
6126178 |
ggttcacaagttgacagaagctcaatcagaagacgcactcttcctcctccttttcat |
6126234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 6151919 - 6152025
Alignment:
| Q |
12 |
ctactggtgctgggaatgatgagttgtgtcaggctaattcatcattcaagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaagg |
111 |
Q |
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| T |
6151919 |
ctactggtactagaaatgatgagttgtttcgtgctagttcacggttaaagagaagtagatcacatgatccattaactagaggtgaaacttctaatcaagg |
6152018 |
T |
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| Q |
112 |
ttcacaa |
118 |
Q |
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| T |
6152019 |
tttacaa |
6152025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 6138494 - 6138589
Alignment:
| Q |
59 |
aagagaagtagatcacctgatccattcactagaggtgaaacttctaatcaaggttcacaaattggtgaaaggtttagcagaagacgcactcttcct |
154 |
Q |
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| T |
6138494 |
aagagaagcagatcaccaaatgcattaaatagaggtgaaacttctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttcct |
6138589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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