View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-41 (Length: 117)
Name: Solexa-NF5831-41
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-41 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 12571819 - 12571932
Alignment:
| Q |
4 |
atgaataaagtgccgatgtaatgtaccaccaagaaaattctctaattcctaaataagtgtaggactctcttaatgttatctcttgtactcataacaaaga |
103 |
Q |
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| T |
12571819 |
atgaataaagtgccgatgtaatgtaccaccaagaaaattctctaattcctaaacaagagtaggactctcttaatgttatctcttgtactcataacaaaga |
12571918 |
T |
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| Q |
104 |
gaataaacatatca |
117 |
Q |
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| T |
12571919 |
gaataaacatatca |
12571932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 13548283 - 13548396
Alignment:
| Q |
4 |
atgaataaagtgccgatgtaatgtaccaccaagaaaattctctaattcctaaataagtgtaggactctcttaatgttatctcttgtactcataacaaaga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13548283 |
atgaataaagtgccgatgtaatgtaccaccaagaaaattctctaattcctaaacaagagtaggactctcttaatgttatctcttgtactcataacaaaga |
13548382 |
T |
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| Q |
104 |
gaataaacatatca |
117 |
Q |
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| T |
13548383 |
gaataaacatatca |
13548396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 4e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 4293675 - 4293562
Alignment:
| Q |
4 |
atgaataaagtgccgatgtaatgtaccaccaagaaaattctctaattcctaaataagtgtaggactctcttaatgttatctcttgtactcataacaaaga |
103 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4293675 |
atgaaaaaagtaccgatgtaatgtaccaccaagaaaattctctaattcctaaataagagtaggactctcttaatgttatctcttgtactcataacaaaga |
4293576 |
T |
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| Q |
104 |
gaataaacatatca |
117 |
Q |
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| T |
4293575 |
gaataaacatatca |
4293562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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