View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-43 (Length: 115)
Name: Solexa-NF5831-43
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-43 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 27562393 - 27562279
Alignment:
| Q |
1 |
cagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgatt |
100 |
Q |
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| T |
27562393 |
cagagagagccatggttttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgatt |
27562294 |
T |
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| Q |
101 |
ctgtatgagatatat |
115 |
Q |
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|||| |||||||||| |
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| T |
27562293 |
ctgtctgagatatat |
27562279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 36669448 - 36669348
Alignment:
| Q |
1 |
cagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgatt |
100 |
Q |
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| T |
36669448 |
cagagagagctatgggtttgtctgagttgaagaattcaattgaggaagtgaaggtttt-atttttgtgatttctttccttctgtcattcatttgtcgatt |
36669350 |
T |
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| Q |
101 |
ct |
102 |
Q |
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|| |
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| T |
36669349 |
ct |
36669348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 26928929 - 26928828
Alignment:
| Q |
1 |
cagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgatt |
100 |
Q |
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| T |
26928929 |
cagagagagccattactttgtccgacttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgatt |
26928830 |
T |
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| Q |
101 |
ct |
102 |
Q |
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|| |
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| T |
26928829 |
ct |
26928828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 29411929 - 29411856
Alignment:
| Q |
9 |
gccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcga-tttctttccttc |
81 |
Q |
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| T |
29411929 |
gccatgggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttc |
29411856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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