View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-47 (Length: 96)
Name: Solexa-NF5831-47
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-47 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 4351259 - 4351347
Alignment:
| Q |
8 |
gagctaaggttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaacaactatagaaacacattcatgaat |
96 |
Q |
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| T |
4351259 |
gagctaaggttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaccaactatagaaacccattcatgaat |
4351347 |
T |
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Target: scaffold0352 (Bit Score: 73; Significance: 6e-34; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 15759 - 15672
Alignment:
| Q |
8 |
gagctaaggttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaacaactatagaaacacattcatgaat |
96 |
Q |
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| T |
15759 |
gagctaaggttctcttattcatattttt-ctcttcagatttatctttattgaaattgttcacaccaactatagaaacccattcatgaat |
15672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 29199316 - 29199396
Alignment:
| Q |
16 |
gttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaacaactatagaaacacattcatgaat |
96 |
Q |
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| T |
29199316 |
gttctcttattcatattttttctctttagatttatctatattgaaattgttcacagcgactgtagcaacatattcttgaat |
29199396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 25901152 - 25901098
Alignment:
| Q |
16 |
gttctcttattcatattttttctcttcagatttatctttattgaaattgttcaca |
70 |
Q |
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| T |
25901152 |
gttctcttattcatactttttctcttgagatttatctacattgaaattgttcaca |
25901098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 36463997 - 36464059
Alignment:
| Q |
16 |
gttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaacaactat |
78 |
Q |
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|||||||||| | |||||| ||| ||||||||||| ||||||||||| | ||||| ||||||| |
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| T |
36463997 |
gttctcttatccttattttctctgttcagatttatttttattgaaatagatcacaccaactat |
36464059 |
T |
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