View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-48 (Length: 90)
Name: Solexa-NF5831-48
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-48 |
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Alignment Details
Target: chr4 (Bit Score: 56; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-24
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14494325 - 14494238
Alignment:
| Q |
1 |
tattccaaattggttttgggatatttcacctttgctgacacttttaaacatgtctcataatgagttacaaggtcagcttccaaatcca |
88 |
Q |
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| T |
14494325 |
tattccaaattggttttgggatattacatcttcgttgacaattataaacatgtctcataatgagttacaaggtcggcttccaagtcca |
14494238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 14457071 - 14457109
Alignment:
| Q |
47 |
aacatgtctcataatgagttacaaggtcagcttccaaat |
85 |
Q |
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| T |
14457071 |
aacatgtctcataatgagttacaaggtcggcttccaaat |
14457109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 14469863 - 14469817
Alignment:
| Q |
42 |
ttttaaacatgtctcataatgagttacaaggtcagcttccaaatcca |
88 |
Q |
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| T |
14469863 |
ttttaaacatgtcacataatgagttacagggttggcttccaaatcca |
14469817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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