View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-49 (Length: 81)
Name: Solexa-NF5831-49
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-49 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 5e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-31
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 1637252 - 1637323
Alignment:
| Q |
9 |
aaatgttgtaaggctgtttgacaacggttttcacaagcgcaacgtcgattggagcaccactcacagcagatc |
80 |
Q |
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| T |
1637252 |
aaatgttgtaaggctgtttgacaacggttttcacaagggcaacgtcgattggagcaccactcacagcagatc |
1637323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 1612687 - 1612718
Alignment:
| Q |
49 |
aacgtcgattggagcaccactcacagcagatc |
80 |
Q |
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| T |
1612687 |
aacgtcgattggagcaccactcacagcagatc |
1612718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 1629223 - 1629254
Alignment:
| Q |
49 |
aacgtcgattggagcaccactcacagcagatc |
80 |
Q |
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| T |
1629223 |
aacgtcgattggagcaccactcacagcagatc |
1629254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 80
Target Start/End: Original strand, 1622155 - 1622186
Alignment:
| Q |
49 |
aacgtcgattggagcaccactcacagcagatc |
80 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
1622155 |
aacgtcgatgggagcaccactcacagcagatc |
1622186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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