View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5831-55 (Length: 48)
Name: Solexa-NF5831-55
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-55 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 41; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 5842164 - 5842124
Alignment:
| Q |
8 |
gacacatcaatcaaccaaagttcattaatgcagcaatatga |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5842164 |
gacacatcaatcaaccaaagttcattaatgcagcaatatga |
5842124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 5848874 - 5848834
Alignment:
| Q |
8 |
gacacatcaatcaaccaaagttcattaatgcagcaatatga |
48 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848874 |
gacacatcaatcaaccaaagttcattaatgcagcaatatga |
5848834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 5886483 - 5886449
Alignment:
| Q |
14 |
tcaatcaaccaaagttcattaatgcagcaatatga |
48 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
5886483 |
tcaatcaaccaaagttcattaatgcaacaatatga |
5886449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University