View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5831-7 (Length: 154)
Name: Solexa-NF5831-7
Description: NF5831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5831-7 |
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Alignment Details
Target: chr3 (Bit Score: 59; Significance: 2e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28151410 - 28151468
Alignment:
| Q |
8 |
cttcttacaagtattattgttcattttttatatatttcattgcgttgggagcctactgc |
66 |
Q |
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| T |
28151410 |
cttcttacaagtattattgttcattttttatatatttcattgcgttgggagcctactgc |
28151468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 28151505 - 28151556
Alignment:
| Q |
103 |
ctataatgaagtaagcctatttcagacgaaaatatctatagtgtgcctgatc |
154 |
Q |
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| T |
28151505 |
ctataatgaagtaagcctatttcagacgaaaatatctatagcgtggctgatc |
28151556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 28506778 - 28506727
Alignment:
| Q |
103 |
ctataatgaagtaagcctatttcagacgaaaatatctatagtgtgcctgatc |
154 |
Q |
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| T |
28506778 |
ctatcatgaagtaagcctatttcagacgaaaatatctatagtgtggctgatc |
28506727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 27459120 - 27459079
Alignment:
| Q |
106 |
taatgaagtaagcctatttcagacgaaaatatctatagtgtg |
147 |
Q |
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| T |
27459120 |
taatgaagcaagcctatctcagacgaaaatatatatagtgtg |
27459079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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