View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-10 (Length: 143)
Name: Solexa-NF5832-10
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 6e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 6e-72
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 22517101 - 22517241
Alignment:
| Q |
3 |
cacagagccacaaacaccacacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcaaaattcttgtaattggt |
102 |
Q |
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| T |
22517101 |
cacagagccacaaacaccgcacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgcaaaattcttgtaattggt |
22517200 |
T |
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| Q |
103 |
tcacactgtccatccaagatcattccactttggtcaccaga |
143 |
Q |
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| T |
22517201 |
tcacactgtccatccaagatcattccactttggtcaccaga |
22517241 |
T |
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Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 416710 - 416635
Alignment:
| Q |
10 |
ccacaaacaccacacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
85 |
Q |
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| T |
416710 |
ccacaaacaccacacctcacgtcacgacttccatgagcacacacaaaaatatatgaacctgctatcacgtcttgca |
416635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 405539 - 405464
Alignment:
| Q |
10 |
ccacaaacaccacacctcacgtcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
85 |
Q |
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|||||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
405539 |
ccacaaacaccacacctcacatcacgacttccgtgagcacacacaaaattatatgaacctgctatcacatcttgca |
405464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 399821 - 399897
Alignment:
| Q |
10 |
ccacaaacaccacacctcacg-tcgcgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
85 |
Q |
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||||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
399821 |
ccacaaacagcacaccttacaatcacgacttccatgagcacacacaaaaatatatgaacctgctatcacatcttgca |
399897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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