View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5832-11 (Length: 142)

Name: Solexa-NF5832-11
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5832-11
Solexa-NF5832-11
[»] chr7 (1 HSPs)
chr7 (1-86)||(2430706-2430791)
[»] chr3 (6 HSPs)
chr3 (1-86)||(38888281-38888366)
chr3 (1-86)||(46235375-46235460)
chr3 (1-86)||(43747869-43747954)
chr3 (1-83)||(5175504-5175586)
chr3 (1-83)||(5185781-5185862)
chr3 (1-80)||(5241253-5241334)
[»] chr8 (3 HSPs)
chr8 (1-86)||(26747835-26747920)
chr8 (2-86)||(27631664-27631748)
chr8 (1-60)||(24100809-24100868)
[»] chr1 (3 HSPs)
chr1 (1-86)||(4796031-4796116)
chr1 (1-86)||(8170499-8170584)
chr1 (1-83)||(25659089-25659171)
[»] chr2 (1 HSPs)
chr2 (1-86)||(5077248-5077333)
[»] chr4 (5 HSPs)
chr4 (1-83)||(49889330-49889412)
chr4 (1-86)||(49233166-49233251)
chr4 (1-86)||(53921837-53921920)
chr4 (14-86)||(45781779-45781851)
chr4 (37-80)||(30658062-30658105)
[»] chr5 (4 HSPs)
chr5 (1-86)||(7529843-7529928)
chr5 (1-84)||(9269620-9269702)
chr5 (34-86)||(35467931-35467983)
chr5 (1-35)||(35467575-35467609)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-83)||(67694-67777)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-86)||(27868-27954)
[»] scaffold1844 (1 HSPs)
scaffold1844 (13-78)||(37-102)


Alignment Details
Target: chr7 (Bit Score: 74; Significance: 3e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2430791 - 2430706
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  2430791 agaagaaagagggaagaagacaaaaatgtctaatatgccattgattttttaattaatcataaattataatgttgtcttattaagga 2430706  T

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Target: chr3 (Bit Score: 74; Significance: 3e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38888281 - 38888366
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38888281 agaagaaagagggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaattataatgttgtcttatcaagga 38888366  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46235375 - 46235460
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46235375 agaagaaagagggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaattataatgatgtcttatcaagga 46235460  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43747954 - 43747869
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  43747954 agaagaatgagagaagaagacaaaaaagtctattatgccattggttttttaattattcataaattataatgttgtcttatcaagga 43747869  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5175504 - 5175586
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 83  Q
    |||| ||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  5175504 agaacaaagagggaagaagataaaaaagtctaatatgtcattggtttttcaattaatcataaattataatgttgtcttatcaa 5175586  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5185781 - 5185862
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggtttttt-aattaatcataaattataattttgtcttatcaa 83  Q
    |||||||||||| ||||| ||||||  ||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  5185781 agaagaaagaggaaagaacacaaaa--gtctaatataccattggttttttcaattaatcataaattataatattggcttatcaa 5185862  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5241253 - 5241334
Alignment:
Q  1 agaagaaagagggaagaagacaaaa-atgtctaatatgccattggttttt-taattaatcataaattataattttgtcttat 80  Q
    |||||||||||||||||| | |||| ||||||||||| |||||| |||||  |||||||||| ||||||||| |||||||||    
T  5241253 agaagaaagagggaagaataaaaaaaatgtctaatataccattgatttttgcaattaatcatcaattataatattgtcttat 5241334  T

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Target: chr8 (Bit Score: 70; Significance: 6e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 26747835 - 26747920
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  26747835 agaagaaagagggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaattagaatgttgtcttatcaagga 26747920  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 27631748 - 27631664
Alignment:
Q  2 gaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| || |||||| |||||    
T  27631748 gaagaaagagggaagaagacaaaaaagtctattatgccattggttttttaattaatcataaagtgtaatgttatcttattaagga 27631664  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24100868 - 24100809
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcat 60  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  24100868 agaagaaagagggaagaggataaaaatgtctaatatgccattgattttttaattaatcat 24100809  T

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Target: chr1 (Bit Score: 70; Significance: 6e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4796116 - 4796031
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  4796116 agaagaaagagggaagaagacaaaaatgtctaatatgccattgatttttcaattaatcataaattataatgttgttttatcaagga 4796031  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8170584 - 8170499
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  8170584 agaagaaagaggaaagaagacaaaaatgtctaatatgccattgatttttcaattaatcataaattataatgttgtcttatcaagga 8170499  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25659171 - 25659089
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 83  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  25659171 agaagaaagagggaagaagacaaaaaagtctattatgtcattggttttttaattaatcataaattataatgttgtcttatcaa 25659089  T

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Target: chr2 (Bit Score: 66; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5077333 - 5077248
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||    
T  5077333 agaagaaagagggaagaagacaaaaaagtctaatatgtcattgattttttaattaatcataaattatgatgttgtcttatcaagga 5077248  T

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Target: chr4 (Bit Score: 63; Significance: 9e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 49889412 - 49889330
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 83  Q
    ||||||||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||    
T  49889412 agaagaaagagggaagaagacaaaaatatctaatatgtcattaattttttaattaatcataaattataatgttgtcttatcaa 49889330  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49233166 - 49233251
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||||||||||||||||||| || || |||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  49233166 agaagaaagagggaagaagacaaaaaagtttattatgccgttggttttttaattgatcataaattataatgttgtcttatcaagga 49233251  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 53921837 - 53921920
Alignment:
Q  1 agaagaaagagggaagaagacaaaaat-gtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||||||||||   ||||||||||||||| |||||||||||||||    
T  53921837 agaagaaagagggaagaagacaaaaaaagtctaatatgtcattggttttttaa---atcataaattataatgttgtcttatcaagga 53921920  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 45781779 - 45781851
Alignment:
Q  14 aagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||||||||| || || |||| ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  45781779 aagaagacaaaaaagtttattatgtcattggttttttaattaatcataaattgtaatgttatcttatcaagga 45781851  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 30658062 - 30658105
Alignment:
Q  37 gccattggttttttaattaatcataaattataattttgtcttat 80  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  30658062 gccattggttttttaattaatcataaattataatgttgtcttat 30658105  T

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Target: chr5 (Bit Score: 62; Significance: 4e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7529928 - 7529843
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||| |||||||||||||||    
T  7529928 agaagaaggagggaagaagacaaaaaagtctaatatgccattgattttttaattaatcataaaaaataatgttgtcttatcaagga 7529843  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9269702 - 9269620
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaag 84  Q
    |||||||||||||||||||||||||| || | |||||  |||||||||| |||||||||||||||||||| |||||||||||||    
T  9269702 agaagaaagagggaagaagacaaaaaagtatgatatgttattggttttt-aattaatcataaattataatgttgtcttatcaag 9269620  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 35467931 - 35467983
Alignment:
Q  34 tatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  35467931 tatgccattgattttttaattaatcataaattataatgttgttttatcaagga 35467983  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35467575 - 35467609
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaata 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  35467575 agaagaaagagggaagaagacaaaaatgtcaaata 35467609  T

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Target: scaffold0060 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 67694 - 67777
Alignment:
Q  1 agaagaaagagggaagaagacaaaaatgtctaatatgccattgg-ttttttaattaatcataaattataattttgtcttatcaa 83  Q
    |||||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||| | ||||||||||||    
T  67694 agaagaaagagggaagaagacaaaaaagtctattatgccgttggtttttttaattaatcataaattatattgttgtcttatcaa 67777  T

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Target: scaffold0096 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27868 - 27954
Alignment:
Q  1 agaagaaagagggaagaagacaaaaat-gtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 86  Q
    ||||||||| || |||||||||||||  ||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  27868 agaagaaaggggaaagaagacaaaaaaagtctattatgccattggttatttaattaattataaattataatgttgtcttatcaagga 27954  T

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Target: scaffold1844 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold1844
Description:

Target: scaffold1844; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 37 - 102
Alignment:
Q  13 gaagaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtctt 78  Q
    |||||||||| ||| |||| |||| ||||| ||||||||   |||||||||||||||| |||||||    
T  37 gaagaagacataaaagtctgatataccattagttttttatcgaatcataaattataatgttgtctt 102  T

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