View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5832-12 (Length: 139)

Name: Solexa-NF5832-12
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5832-12
Solexa-NF5832-12
[»] chr1 (3 HSPs)
chr1 (4-139)||(49874538-49874673)
chr1 (27-112)||(49873279-49873364)
chr1 (45-87)||(8753393-8753436)
[»] chr5 (1 HSPs)
chr5 (27-71)||(34350793-34350837)
[»] chr6 (2 HSPs)
chr6 (58-119)||(21182676-21182737)
chr6 (58-119)||(20758840-20758901)
[»] chr4 (1 HSPs)
chr4 (45-127)||(580001-580084)
[»] chr7 (1 HSPs)
chr7 (26-71)||(43697257-43697302)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 9e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 9e-62
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 49874673 - 49874538
Alignment:
Q  4 ataacaatcctctcgtaccaaaattaatttttgtccagtcaacaactctgggtttcatcttcctgaaaatatattcttgctagtcatgtttcctcgattc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49874673 ataacaatcctctcgtaccaaaattaatttttgtccagtcaacaactctgggtttcatcttcctgaaaatatattcttgctagtcatgtttcctcgattc 49874574  T
Q  104 tacgtcgagaagggtccattaaataatgggaattag 139  Q
    ||||||||||||||||  |||||| |||| ||||||    
T  49874573 tacgtcgagaagggtctgttaaatcatggaaattag 49874538  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 49873364 - 49873279
Alignment:
Q  27 ttaatttttgtccagtcaacaactctgggtttcatcttcctgaaaatatattcttgctagtcatgtttcctcgattctacgtcgag 112  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||  || |||| ||||||||||||||||| ||||||    
T  49873364 ttaatttttgtccggtgaacaactctgggtttcatcttcgtgaaaatatattgatggtagttatgtttcctcgattctatgtcgag 49873279  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 8753436 - 8753393
Alignment:
Q  45 acaactctgggtt-tcatcttcctgaaaatatattcttgctagt 87  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  8753436 acaactctgggttatcatcttcctgaaaatatattcttgctagt 8753393  T

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Target: chr5 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 34350793 - 34350837
Alignment:
Q  27 ttaatttttgtccagtcaacaactctgggtttcatcttcctgaaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34350793 ttaatttttgtccagtcaacaactctgggtttcatcttcctgaaa 34350837  T

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Target: chr6 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 21182737 - 21182676
Alignment:
Q  58 tcatcttcctgaaaatatattcttgctagtcatgtttcctcgattctacgtcgagaagggtc 119  Q
    |||||||||||| |||||||||||||||||  ||||||||| |||| |||| ||||||||||    
T  21182737 tcatcttcctgataatatattcttgctagttctgtttcctcaattccacgttgagaagggtc 21182676  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 20758901 - 20758840
Alignment:
Q  58 tcatcttcctgaaaatatattcttgctagtcatgtttcctcgattctacgtcgagaagggtc 119  Q
    |||||||||||||||||||| |||| |||   || ||||||||||| |||| ||||||||||    
T  20758901 tcatcttcctgaaaatatatgcttgttagatctgattcctcgattcaacgttgagaagggtc 20758840  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 580084 - 580001
Alignment:
Q  45 acaactctgggtt-tcatcttcctgaaaatatattcttgctagtcatgtttcctcgattctacgtcgagaagggtccattaaat 127  Q
    |||||| |||||| ||||||| ||||||||||||| ||| ||||   |||| |||||||||||||||| |||||||| ||||||    
T  580084 acaactttgggttatcatctttctgaaaatatattattgttagttcagttttctcgattctacgtcgaaaagggtccgttaaat 580001  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 43697257 - 43697302
Alignment:
Q  26 attaatttttgtccagtcaacaactctgggtttcatcttcctgaaa 71  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||    
T  43697257 attaatttttgtgcagtcaacaactttgggtttcttcttcctgaaa 43697302  T

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