View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-14 (Length: 137)
Name: Solexa-NF5832-14
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 5e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 5e-60
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 20878949 - 20878813
Alignment:
| Q |
2 |
acagagtagactaccgtgaatcaatacgaaagggacagagacttaaatggaccaaaaattaattatgagatcaaa-tgataccaaaaagatagttaaaga |
100 |
Q |
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| T |
20878949 |
acagagtagactaccgtgaatcaatacgaaagggacagagacttaaatggaccaaaaattaattattagatcaaagtgatgccaaaaagatagttaaagt |
20878850 |
T |
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| Q |
101 |
ctaaaagagaaatttagcctaaatagaataagagata |
137 |
Q |
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| T |
20878849 |
ctaaaagagaaatttagcctaaatagaataagagata |
20878813 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 9378710 - 9378767
Alignment:
| Q |
41 |
gacttaaatggaccaaaaattaattatgagatcaaa-tgataccaaaaagatagttaa |
97 |
Q |
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|||||||| ||||||||||||||||||| || |||| |||||||||||| |||||||| |
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| T |
9378710 |
gacttaaacggaccaaaaattaattatgcgaccaaagtgataccaaaaaaatagttaa |
9378767 |
T |
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