View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5832-15 (Length: 135)

Name: Solexa-NF5832-15
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5832-15
Solexa-NF5832-15
[»] chr7 (1 HSPs)
chr7 (1-76)||(27659365-27659440)
[»] chr5 (1 HSPs)
chr5 (1-76)||(37604635-37604710)
[»] chr1 (1 HSPs)
chr1 (81-134)||(12662880-12662933)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27659440 - 27659365
Alignment:
Q  1 cacagacaaaaacattaaatataatttaagcatggactttgttcacataaacacaaacagcataccagaaaacagg 76  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  27659440 cacaaacaaaaacattaaatataatttaagcaaggactttgttcatataaacacaaacagcataccagaaaacagg 27659365  T

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Target: chr5 (Bit Score: 60; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37604635 - 37604710
Alignment:
Q  1 cacagacaaaaacattaaatataatttaagcatggactttgttcacataaacacaaacagcataccagaaaacagg 76  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  37604635 cacaaacaaaaacattaaatataatttaagcatgaactttgttcatataaacacaaacagcataccaaaaaacagg 37604710  T

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Target: chr1 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 12662880 - 12662933
Alignment:
Q  81 attcattgattagaccaacccctattacaaatataaatttgtagaatttggcta 134  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12662880 attcattgattagaccaacccttattacaaatataaatttgtagaatttggcta 12662933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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