View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5832-16 (Length: 133)
Name: Solexa-NF5832-16
Description: NF5832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5832-16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 3e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 36420531 - 36420664
Alignment:
| Q |
1 |
gaacagtgtggccattctgccaaagtcttgggt-gaccttattgatgaagaaactgatactactttagagaagaagctagctttccacctagtggagaat |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
36420531 |
gaacagtgtggccattctgccaaagtcttggggagaccttattgatgaagaaactgatactaccttagagaaggagctagctttccacctagtggagaat |
36420630 |
T |
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| Q |
100 |
tcatctatttgtctagatagtcaagtcttaaatt |
133 |
Q |
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| T |
36420631 |
tcatctatttgtctagatagtcaagtcttaaatt |
36420664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45348163 - 45348275
Alignment:
| Q |
1 |
gaacagtgtggccattctgccaaagtcttg-ggtgaccttattgatgaagaaactgatactactttagagaagaagctagctttccacctagtggagaat |
99 |
Q |
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||||||||||| |||||||||||||||||| || |||||| ||||||||| |||||| | | |||||||| | || ||||||||| | ||||||| |
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| T |
45348163 |
gaacagtgtgggcattctgccaaagtcttgcggagaccttgcggatgaagaatctgataattccttagagaatgatctcactttccacccaatggagaac |
45348262 |
T |
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| Q |
100 |
tcatctatttgtc |
112 |
Q |
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||||| ||||||| |
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| T |
45348263 |
tcatccatttgtc |
45348275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45357642 - 45357754
Alignment:
| Q |
1 |
gaacagtgtggccattctgccaaagtcttg-ggtgaccttattgatgaagaaactgatactactttagagaagaagctagctttccacctagtggagaat |
99 |
Q |
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||||||||||| |||||||||||||||||| || |||||| ||||||||| |||||| | | |||||||| | || ||||||||| | ||||||| |
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| T |
45357642 |
gaacagtgtgggcattctgccaaagtcttgcggagaccttgcggatgaagaatctgataattccttagagaatgatctcactttccacccaatggagaac |
45357741 |
T |
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| Q |
100 |
tcatctatttgtc |
112 |
Q |
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| T |
45357742 |
tcatccatttgtc |
45357754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 45119845 - 45119774
Alignment:
| Q |
1 |
gaacagtgtggccattctgccaaagtctt-gggtgaccttattgatgaagaaactgatactactttagagaa |
71 |
Q |
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||||||||||| ||||||||||||||||| ||| |||||| |||||||||| |||||| | | |||||||| |
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| T |
45119845 |
gaacagtgtgggcattctgccaaagtcttggggagaccttgctgatgaagaatctgataattccttagagaa |
45119774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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